{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"SEraster","owner":"JEFworks-Lab","isFork":false,"description":"Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis","allTopics":["rstats","spatial-analysis","spatial-data-analysis","spatial-transcriptomics","spatial-omics"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":10,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-04T20:53:19.058Z"}},{"type":"Public","name":"CRAWDAD","owner":"JEFworks-Lab","isFork":false,"description":"Cell-type Relationship Analysis Workflow Done Across Distances","allTopics":["proteomics","spatial-analysis","transcriptomics","spatial-omics"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":12,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T23:32:29.068Z"}},{"type":"Public","name":"HuBMAP_Workspaces_WIP","owner":"JEFworks-Lab","isFork":false,"description":"Work-in-progress templates for HuBMAP workspaces","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-14T12:05:19.826Z"}},{"type":"Public","name":"jefworks-lab.github.io","owner":"JEFworks-Lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":1,"starsCount":4,"forksCount":24,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-10T16:25:01.591Z"}},{"type":"Public","name":"genomic-data-visualization-2024","owner":"JEFworks-Lab","isFork":false,"description":"Course website for Genomic Data Visualization 2024","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":21,"forksCount":32,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-15T17:33:09.233Z"}},{"type":"Public","name":"STalign","owner":"JEFworks-Lab","isFork":false,"description":"Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping","allTopics":["bioinformatics","alignment","diffeomorphism","singlecell","spatialtranscriptomics"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":7,"starsCount":55,"forksCount":8,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-11T21:09:28.808Z"}},{"type":"Public","name":"STdeconvolve","owner":"JEFworks-Lab","isFork":false,"description":"Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":13,"starsCount":95,"forksCount":11,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-11T21:33:43.231Z"}},{"type":"Public","name":"genomic-data-visualization-2023","owner":"JEFworks-Lab","isFork":false,"description":"Course website for Genomic Data Visualization 2023","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":9,"forksCount":19,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-11T13:00:52.463Z"}},{"type":"Public","name":"MERmaid","owner":"JEFworks-Lab","isFork":false,"description":"WebGL-based viewer for spatially-resolved transcriptomics data","allTopics":["javascript","webgl","reactjs","data-visualization","single-cell","spatial-transcriptomics"],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":18,"issueCount":4,"starsCount":26,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-01-06T07:32:47.359Z"}},{"type":"Public","name":"genomic-data-visualization-2022","owner":"JEFworks-Lab","isFork":false,"description":"Course website for Genomic Data Visualization 2022","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":1,"starsCount":16,"forksCount":20,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-28T19:59:21.809Z"}},{"type":"Public","name":"veloviz","owner":"JEFworks-Lab","isFork":false,"description":"RNA-velocity informed embeddings for visualizing cellular trajectories","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":40,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-09-05T17:45:03.303Z"}},{"type":"Public","name":"MERINGUE","owner":"JEFworks-Lab","isFork":false,"description":"characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities","allTopics":["gene-expression","rstats","spatial-analysis","single-cell","spatial-transcriptomics","cell-cell-communication"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":6,"starsCount":52,"forksCount":5,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-07T01:43:29.280Z"}},{"type":"Public","name":"snakepit","owner":"JEFworks-Lab","isFork":false,"description":"snakemake files","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-06T20:05:14.844Z"}},{"type":"Public","name":"HoneyBADGER","owner":"JEFworks-Lab","isFork":false,"description":"HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data","allTopics":["hmm","bioinformatics","bayesian","transcriptomics","subpopulation","heterogeneity","single-cell-rna-seq","single-cell-analysis","cnv-detection"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":14,"starsCount":96,"forksCount":31,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-07-19T17:08:44.840Z"}},{"type":"Public","name":"NSF_CAREER","owner":"JEFworks-Lab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-04-15T15:24:54.158Z"}},{"type":"Public","name":"R-style-guide","owner":"JEFworks-Lab","isFork":false,"description":"Best practices for readable, sharable, and verifiable R code","allTopics":["styleguide","rstats","best-practices","collaboration"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":16,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-03-26T01:50:40.815Z"}}],"repositoryCount":16,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}