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Google Summer of Code 2022

Organisation: INCF, OpenSourceBrain
Mentors: Padraig Gleeson and Ankur Sinha
Contributor: Rahul Sonkar

Project

Developement of Jupyter Notebook for Generic NeuroML Model

Deliverables

  1. Interactive notebook for Hodgkin Huxley Tutorial
    1. Using available python code (https://github.com/openworm/hodgkin_huxley_tutorial/tree/master/notebooks/Python_HH_version)
    2. Using NeuroML version (https://github.com/openworm/hodgkin_huxley_tutorial/tree/master/notebooks/NeuroML_HH_version)
    3. Updated Sphinx documentation for HH Tutorial
    4. Support for voltage clamp in python code
  2. Notebook for generic NeuroML model,
    1. Based on python's Element Tree method. (https://github.com/openworm/hodgkin_huxley_tutorial/tree/master/notebooks/NeuroML_Generic_ET)
    2. Based on libneuroml API (https://github.com/openworm/hodgkin_huxley_tutorial/tree/master/notebooks/NeuroML_Generic_libneuro)