_viash.yaml

viash_version: 0.8.5

source: src
target: target

config_mods: |
  .functionality.version := 'dev'
  .functionality.requirements.commands := ['ps']
  .functionality.arguments[.multiple == true].multiple_sep := ";"
  .functionality.argument_groups[true].arguments[.multiple == true].multiple_sep := ";"
  .functionality.test_resources += {path: 'src/base/openpipelinetestutils', dest: 'openpipelinetestutils'}
  .platforms[.type == 'docker'].namespace_separator := '/'
  .platforms[.type == 'docker'].target_registry := 'ghcr.io'
  .platforms[.type == 'docker'].target_organization := 'openpipelines-bio'
  .platforms[.type == 'docker'].target_image_source := 'https://github.com/openpipelines-bio/openpipeline'
  .platforms[.type == 'nextflow'].directives.tag := '$id'
  .platforms[.type == 'nextflow'].auto.simplifyOutput := false
  .platforms[.type == 'nextflow'].config.script := 'includeConfig("nextflow_labels.config")'
  .functionality.resources += {path: './src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}