/
_api.py
1084 lines (948 loc) · 36.9 KB
/
_api.py
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# This file is part of the Open Data Cube, see https://opendatacube.org for more information
#
# Copyright (c) 2015-2020 ODC Contributors
# SPDX-License-Identifier: Apache-2.0
# We often have one-arg-per column, so these checks aren't so useful.
# pylint: disable=too-many-arguments,too-many-public-methods,too-many-lines
# SQLAlchemy queries require "column == None", not "column is None" due to operator overloading:
# pylint: disable=singleton-comparison
"""
Persistence API implementation for postgis.
"""
import json
import logging
import uuid # noqa: F401
from sqlalchemy import cast
from sqlalchemy import delete, update
from sqlalchemy.dialects.postgresql import insert
from sqlalchemy import select, text, and_, or_, func
from sqlalchemy.dialects.postgresql import INTERVAL
from typing import Iterable, Tuple, Sequence
from datacube.index.fields import OrExpression
from datacube.model import Range
from datacube.utils import geometry
from datacube.utils.geometry import CRS, Geometry
from . import _core
from . import _dynamic as dynamic
from ._fields import parse_fields, Expression, PgField, PgExpression # noqa: F401
from ._fields import NativeField, DateDocField, SimpleDocField
from ._schema import MetadataType, Product, \
Dataset, DatasetSource, DatasetLocation, SelectedDatasetLocation
from ._spatial import geom_alchemy
from .sql import escape_pg_identifier
# Make a function because it's broken
def _dataset_select_fields():
return (
Dataset,
# All active URIs, from newest to oldest
func.array(
select(
SelectedDatasetLocation.uri
).where(
and_(
SelectedDatasetLocation.dataset_ref == Dataset.id,
SelectedDatasetLocation.archived == None
)
).order_by(
SelectedDatasetLocation.added.desc(),
SelectedDatasetLocation.id.desc()
).label('uris')
).label('uris')
)
PGCODE_UNIQUE_CONSTRAINT = '23505'
PGCODE_FOREIGN_KEY_VIOLATION = '23503'
_LOG = logging.getLogger(__name__)
def _split_uri(uri):
"""
Split the scheme and the remainder of the URI.
"""
idx = uri.find(':')
if idx < 0:
raise ValueError("Not a URI")
return uri[:idx], uri[idx+1:]
def get_native_fields():
# Native fields (hard-coded into the schema)
fields = {
'id': NativeField(
'id',
'Dataset UUID',
Dataset.id
),
'indexed_time': NativeField(
'indexed_time',
'When dataset was indexed',
Dataset.added
),
'indexed_by': NativeField(
'indexed_by',
'User who indexed the dataset',
Dataset.added_by
),
'product': NativeField(
'product',
'Product name',
Product.name
),
'product_id': NativeField(
'product_id',
'ID of a dataset type',
Dataset.product_ref
),
'metadata_type': NativeField(
'metadata_type',
'Metadata type name of dataset',
MetadataType.name
),
'metadata_type_id': NativeField(
'metadata_type_id',
'ID of a metadata type',
Dataset.metadata_type_ref
),
'metadata_doc': NativeField(
'metadata_doc',
'Full metadata document',
Dataset.metadata_doc
),
# Fields that can affect row selection
# Note that this field is a single uri: selecting it will result in one-result per uri.
# (ie. duplicate datasets if multiple uris, no dataset if no uris)
'uri': NativeField(
'uri',
"Dataset URI",
DatasetLocation.uri_body,
alchemy_expression=DatasetLocation.uri,
affects_row_selection=True
),
}
return fields
def get_dataset_fields(metadata_type_definition):
dataset_section = metadata_type_definition['dataset']
fields = get_native_fields()
# "Fixed fields" (not dynamic: defined in metadata type schema)
fields.update(dict(
creation_time=DateDocField(
'creation_time',
'Time when dataset was created (processed)',
Dataset.metadata_doc,
False,
offset=dataset_section.get('creation_dt') or ['creation_dt']
),
format=SimpleDocField(
'format',
'File format (GeoTiff, NetCDF)',
Dataset.metadata_doc,
False,
offset=dataset_section.get('format') or ['format', 'name']
),
label=SimpleDocField(
'label',
'Label',
Dataset.metadata_doc,
False,
offset=dataset_section.get('label') or ['label']
),
))
# noinspection PyTypeChecker
fields.update(
parse_fields(
dataset_section['search_fields'],
Dataset.metadata_doc
)
)
return fields
class PostgisDbAPI(object):
def __init__(self, parentdb, connection):
self._db = parentdb
self._connection = connection
@property
def in_transaction(self):
return self._connection.in_transaction()
def begin(self):
self._connection.execute(text('BEGIN'))
def commit(self):
self._connection.execute(text('COMMIT'))
def rollback(self):
self._connection.execute(text('ROLLBACK'))
def execute(self, command):
return self._connection.execute(command)
def insert_dataset(self, metadata_doc, dataset_id, product_id):
"""
Insert dataset if not already indexed.
:type metadata_doc: dict
:type dataset_id: str or uuid.UUID
:type product_id: int
:return: whether it was inserted
:rtype: bool
"""
metadata_subquery = select(Product.metadata_type_ref).where(Product.id == product_id).scalar_subquery()
ret = self._connection.execute(
insert(Dataset).values(
id=dataset_id,
product_ref=product_id,
metadata=metadata_doc,
metadata_type_ref=metadata_subquery
).on_conflict_do_nothing(
index_elements=['id']
)
)
return ret.rowcount > 0
def update_dataset(self, metadata_doc, dataset_id, product_id):
"""
Update dataset
:type metadata_doc: dict
:type dataset_id: str or uuid.UUID
:type product_id: int
"""
res = self._connection.execute(
update(Dataset).returning(Dataset.id).where(
Dataset.id == dataset_id
).where(
Dataset.product_ref == product_id
).values(
metadata=metadata_doc
)
)
return res.rowcount > 0
def insert_dataset_location(self, dataset_id, uri):
"""
Add a location to a dataset if it is not already recorded.
Returns True if success, False if this location already existed
:type dataset_id: str or uuid.UUID
:type uri: str
:rtype bool:
"""
scheme, body = _split_uri(uri)
r = self._connection.execute(
insert(DatasetLocation).on_conflict_do_nothing(
index_elements=['uri_scheme', 'uri_body', 'dataset_ref']
).values(
dataset_ref=dataset_id,
uri_scheme=scheme,
uri_body=body,
)
)
return r.rowcount > 0
@staticmethod
def _sanitise_extent(extent, crs):
if not crs.valid_region:
# No valid region on CRS, just reproject
return extent.to_crs(crs)
geo_extent = extent.to_crs(CRS("EPSG:4326"))
if crs.valid_region.contains(geo_extent):
# Valid region contains extent, just reproject
return extent.to_crs(crs)
if not crs.valid_region.intersects(geo_extent):
# Extent is entirely outside of valid region - return None
return None
# Clip to valid region and reproject
valid_extent = geo_extent & crs.valid_region
if valid_extent.wkt == "POLYGON EMPTY":
# Extent is entirely outside of valid region - return None
return None
return valid_extent.to_crs(crs)
def insert_dataset_spatial(self, dataset_id, crs, extent):
"""
Add a spatial index entry for a dataset if it is not already recorded.
Returns True if success, False if this location already existed
:type dataset_id: str or uuid.UUID
:type crs: CRS
:type extent: Geometry
:rtype bool:
"""
extent = self._sanitise_extent(extent, crs)
if extent is None:
return False
SpatialIndex = self._db.spatial_index(crs) # noqa: N806
geom_alch = geom_alchemy(extent)
r = self._connection.execute(
insert(
SpatialIndex
).values(
dataset_ref=dataset_id,
extent=geom_alch,
).on_conflict_do_update(
index_elements=[SpatialIndex.dataset_ref],
set_=dict(extent=geom_alch)
)
)
return r.rowcount > 0
def spatial_extent(self, ids, crs):
SpatialIndex = self._db.spatial_index(crs) # noqa: N806
if SpatialIndex is None:
return None
result = self._connection.execute(
select([
func.ST_AsGeoJSON(func.ST_Union(SpatialIndex.extent))
]).select_from(
SpatialIndex
).where(
SpatialIndex.dataset_ref.in_(ids)
)
)
for r in result:
extent_json = r[0]
if extent_json is None:
return None
return Geometry(json.loads(extent_json), crs=crs)
return None
def contains_dataset(self, dataset_id):
return bool(
self._connection.execute(
select(Dataset.id).where(
Dataset.id == dataset_id
)
).fetchone()
)
def datasets_intersection(self, dataset_ids):
""" Compute set intersection: db_dataset_ids & dataset_ids
"""
return [ds.id for ds in self._connection.execute(
select(
Dataset.id
).where(
Dataset.id.in_(dataset_ids)
)
).fetchall()
]
def get_datasets_for_location(self, uri, mode=None):
scheme, body = _split_uri(uri)
if mode is None:
mode = 'exact' if body.count('#') > 0 else 'prefix'
if mode == 'exact':
body_query = DatasetLocation.uri_body == body
elif mode == 'prefix':
body_query = DatasetLocation.uri_body.startswith(body)
else:
raise ValueError('Unsupported query mode {}'.format(mode))
return self._connection.execute(
select(
_dataset_select_fields()
).join(
Dataset.locations
).where(
and_(DatasetLocation.uri_scheme == scheme, body_query)
)
).fetchall()
def all_dataset_ids(self, archived: bool):
query = select(Dataset.id)
if archived:
query = query.where(
Dataset.archived != None
)
else:
query = query.where(
Dataset.archived == None
)
return self._connection.execute(query).fetchall()
def insert_dataset_source(self, classifier, dataset_id, source_dataset_id):
r = self._connection.execute(
insert(DatasetSource).on_conflict_do_nothing(
index_elements=['classifier', 'dataset_ref']
).values(
classifier=classifier,
dataset_ref=dataset_id,
source_dataset_ref=source_dataset_id
)
)
return r.rowcount > 0
def archive_dataset(self, dataset_id):
r = self._connection.execute(
update(Dataset).where(
Dataset.id == dataset_id
).where(
Dataset.archived == None
).values(
archived=func.now()
)
)
return r.rowcount > 0
def restore_dataset(self, dataset_id):
r = self._connection.execute(
update(Dataset).where(
Dataset.id == dataset_id
).values(
archived=None
)
)
return r.rowcount > 0
def delete_dataset(self, dataset_id):
self._connection.execute(
delete(DatasetLocation).where(
DatasetLocation.dataset_ref == dataset_id
)
)
self._connection.execute(
delete(DatasetSource).where(
DatasetSource.dataset_ref == dataset_id
)
)
for crs in self._db.spatial_indexes():
SpatialIndex = self._db.spatial_index(crs) # noqa: N806
self._connection.execute(
delete(
SpatialIndex
).where(
SpatialIndex.dataset_ref == dataset_id
)
)
r = self._connection.execute(
delete(Dataset).where(
Dataset.id == dataset_id
)
)
return r.rowcount > 0
def get_dataset(self, dataset_id):
return self._connection.execute(
select(_dataset_select_fields()).where(Dataset.id == dataset_id)
).first()
def get_datasets(self, dataset_ids):
return self._connection.execute(
select(_dataset_select_fields()).where(Dataset.id.in_(dataset_ids))
).fetchall()
def get_derived_datasets(self, dataset_id):
raise NotImplementedError
def get_dataset_sources(self, dataset_id):
raise NotImplementedError
def search_datasets_by_metadata(self, metadata):
"""
Find any datasets that have the given metadata.
:type metadata: dict
:rtype: dict
"""
# Find any storage types whose 'dataset_metadata' document is a subset of the metadata.
return self._connection.execute(
select(_dataset_select_fields()).where(Dataset.metadata_doc.contains(metadata))
).fetchall()
@staticmethod
def _alchemify_expressions(expressions):
def raw_expr(expression):
if isinstance(expression, OrExpression):
return or_(raw_expr(expr) for expr in expression.exprs)
return expression.alchemy_expression
return [raw_expr(expression) for expression in expressions]
def search_datasets_query(self,
expressions, source_exprs=None,
select_fields=None, with_source_ids=False,
limit=None, geom=None):
"""
:type expressions: Tuple[Expression]
:type source_exprs: Tuple[Expression]
:type select_fields: Iterable[PgField]
:type with_source_ids: bool
:type limit: int
:type geom: Geometry
:rtype: sqlalchemy.Expression
"""
# TODO: lineage handling and source search
assert source_exprs is None
assert not with_source_ids
if select_fields:
select_columns = tuple(
f.alchemy_expression.label(f.name)
for f in select_fields
)
else:
select_columns = _dataset_select_fields()
if geom:
# Check geom CRS - do we have a spatial index for this CRS?
# Yes? Use it!
# No? Convert to 4326 which we should always have a spatial index for by default
if not geom.crs:
raise ValueError("Search geometry must have a CRS")
SpatialIndex = self._db.spatial_index(geom.crs) # noqa: N806
if SpatialIndex is None:
_LOG.info("No spatial index for crs %s - converting to 4326", geom.crs)
default_crs = CRS("EPSG:4326")
geom = geom.to_crs(default_crs)
SpatialIndex = self._db.spatial_index(default_crs) # noqa: N806
geom_sql = geom_alchemy(geom)
_LOG.info("query geometry = %s (%s)", geom.json, geom.crs)
spatialquery = func.ST_Intersects(SpatialIndex.extent, geom_sql)
else:
spatialquery = None
SpatialIndex = None # noqa: N806
raw_expressions = PostgisDbAPI._alchemify_expressions(expressions)
join_tables = PostgisDbAPI._join_tables(Dataset, expressions, select_fields)
where_expr = and_(Dataset.archived == None, *raw_expressions)
query = select(select_columns).select_from(Dataset)
for join in join_tables:
query = query.join(join)
if spatialquery is not None:
where_expr = and_(where_expr, spatialquery)
query = query.join(SpatialIndex)
query = query.where(where_expr).limit(limit)
return query
def search_datasets(self, expressions,
source_exprs=None, select_fields=None,
with_source_ids=False, limit=None,
geom=None):
"""
:type with_source_ids: bool
:type select_fields: tuple[datacube.drivers.postgis._fields.PgField]
:type expressions: tuple[datacube.drivers.postgis._fields.PgExpression]
"""
select_query = self.search_datasets_query(expressions, source_exprs,
select_fields, with_source_ids,
limit, geom=geom)
_LOG.debug("search_datasets SQL: %s", str(select_query))
return self._connection.execute(select_query)
@staticmethod
def search_unique_datasets_query(expressions, select_fields, limit):
"""
'unique' here refer to that the query results do not contain datasets
having the same 'id' more than once.
We are not dealing with dataset_source table here and we are not joining
dataset table with dataset_location table. We are aggregating stuff
in dataset_location per dataset basis if required. It returns the construted
query.
"""
# TODO
raise NotImplementedError()
def search_unique_datasets(self, expressions, select_fields=None, limit=None):
"""
Processes a search query without duplicating datasets.
'unique' here refer to that the results do not contain datasets having the same 'id'
more than once. we achieve this by not allowing dataset table to join with
dataset_location or dataset_source tables. Joining with other tables would not
result in multiple records per dataset due to the direction of cardinality.
"""
select_query = self.search_unique_datasets_query(expressions, select_fields, limit)
return self._connection.execute(select_query)
def get_duplicates(self, match_fields, expressions):
# TODO
# type: (Tuple[PgField], Tuple[PgExpression]) -> Iterable[tuple]
group_expressions = tuple(f.alchemy_expression for f in match_fields)
join_tables = PostgisDbAPI._join_tables(Dataset, expressions, match_fields)
query = select(
(func.array_agg(Dataset.id),) + group_expressions
).select_from(Dataset)
for join in join_tables:
query = query.join(join)
query = query.where(
and_(Dataset.archived == None, *(PostgisDbAPI._alchemify_expressions(expressions)))
).group_by(
*group_expressions
).having(
func.count(Dataset.id) > 1
)
return self._connection.execute(query)
def count_datasets(self, expressions):
"""
:type expressions: tuple[datacube.drivers.postgis._fields.PgExpression]
:rtype: int
"""
raw_expressions = self._alchemify_expressions(expressions)
select_query = (
select(
func.count(Dataset.id)
).where(
Dataset.archived == None
).where(
*raw_expressions
)
)
return self._connection.scalar(select_query)
def count_datasets_through_time(self, start, end, period, time_field, expressions):
"""
:type period: str
:type start: datetime.datetime
:type end: datetime.datetime
:type expressions: tuple[datacube.drivers.postgis._fields.PgExpression]
:rtype: list[((datetime.datetime, datetime.datetime), int)]
"""
results = self._connection.execute(
self.count_datasets_through_time_query(start, end, period, time_field, expressions)
)
for time_period, dataset_count in results:
# if not time_period.upper_inf:
yield Range(time_period.lower, time_period.upper), dataset_count
def count_datasets_through_time_query(self, start, end, period, time_field, expressions):
raw_expressions = self._alchemify_expressions(expressions)
start_times = select((
func.generate_series(start, end, cast(period, INTERVAL)).label('start_time'),
)).alias('start_times')
time_range_select = (
select((
func.tstzrange(
start_times.c.start_time,
func.lead(start_times.c.start_time).over()
).label('time_period'),
))
).alias('all_time_ranges')
# Exclude the trailing (end time to infinite) row. Is there a simpler way?
time_ranges = (
select((
time_range_select,
)).where(
~func.upper_inf(time_range_select.c.time_period)
)
).alias('time_ranges')
count_query = select(func.count('*'))
join_tables = self._join_tables(Dataset, expressions)
for join in join_tables:
count_query = count_query.join(join)
count_query = count_query.where(
and_(
time_field.alchemy_expression.overlaps(time_ranges.c.time_period),
Dataset.archived == None,
*raw_expressions
)
)
return select((time_ranges.c.time_period, count_query.label('dataset_count')))
def update_spindex(self, crs_seq: Sequence[CRS] = [],
product_names: Sequence[str] = [],
dsids: Sequence[str] = []) -> int:
"""
Update a spatial index
:param crs: CRSs for Spatial Indexes to update. Default=all indexes
:param product_names: Product names to update
:param dsids: Dataset IDs to update
if neither product_names nor dataset ids are supplied, update for all datasets.
if both are supplied, both the named products and identified datasets are updated.
:return: Number of spatial index entries updated or verified as unindexed.
"""
verified = 0
if crs_seq:
crses = [crs for crs in crs_seq]
else:
crses = self._db.spatial_indexes()
# Update implementation.
# Design will change, but this method should be fairly low level to be as efficient as possible
query = select(
Dataset.id,
Dataset.metadata_doc["grid_spatial"]["projection"]
).select_from(Dataset)
if product_names:
query = query.join(Product)
if product_names and dsids:
query = query.where(
or_(
Product.name.in_(product_names),
Dataset.id.in_(dsids)
)
)
elif product_names:
query = query.where(
Product.name.in_(product_names)
)
elif dsids:
query = query.where(
Dataset.id.in_(dsids)
)
def xytuple(o):
return (o['x'], o['y'])
for result in self._connection.execute(query):
dsid = result[0]
native_crs = CRS(result[1]["spatial_reference"])
geom = None
valid_data = result[1].get('valid_data')
if valid_data:
geom = geometry.Geometry(valid_data, crs=native_crs)
else:
geo_ref_points = result[1].get('geo_ref_points')
if geo_ref_points:
geom = geometry.polygon(
[xytuple(geo_ref_points[key]) for key in ('ll', 'ul', 'ur', 'lr', 'll')],
crs=native_crs
)
if not geom:
verified += 1
continue
for crs in crses:
self.insert_dataset_spatial(dsid, crs, geom)
verified += 1
return verified
@staticmethod
def _join_tables(source_table, expressions=None, fields=None):
join_tables = set()
if expressions:
join_tables.update(expression.field.required_alchemy_table for expression in expressions)
if fields:
join_tables.update(field.required_alchemy_table for field in fields)
join_tables.discard(source_table.__table__)
# TODO: Current architecture must sort-hack. Better join awareness required at field level.
sort_order_hack = [DatasetLocation, Dataset, Product, MetadataType]
return [
orm_table
for orm_table in sort_order_hack
if orm_table.__table__ in join_tables
]
def get_product(self, id_):
return self._connection.execute(
select(Product).where(Product.id == id_)
).first()
def get_metadata_type(self, id_):
return self._connection.execute(
select(MetadataType).where(MetadataType.id == id_)
).first()
def get_product_by_name(self, name):
return self._connection.execute(
select(Product).where(Product.name == name)
).first()
def get_metadata_type_by_name(self, name):
return self._connection.execute(
select(MetadataType).where(MetadataType.name == name)
).first()
def insert_product(self,
name,
metadata,
metadata_type_id,
search_fields,
definition,
concurrently=True):
res = self._connection.execute(
insert(Product).values(
name=name,
metadata=metadata,
metadata_type_ref=metadata_type_id,
definition=definition
)
)
type_id = res.inserted_primary_key[0]
# Initialise search fields.
# TODO: Isn't definition['metadata'] the same as metadata?
self._setup_product_fields(type_id, name, search_fields, definition['metadata'],
concurrently=concurrently)
return type_id
def update_product(self,
name,
metadata,
metadata_type_id,
search_fields,
definition,
update_metadata_type=False, concurrently=False):
# TODO: Isn't definition['metadata'] the same as metadata?
res = self._connection.execute(
update(Product).returning(Product.id).where(
Product.name == name
).values(
metadata=metadata,
metadata_type_ref=metadata_type_id,
definition=definition
)
)
prod_id = res.first()[0]
if update_metadata_type:
if not self._connection.in_transaction():
raise RuntimeError('Must update metadata types in transaction')
self._connection.execute(
update(Dataset).where(
Dataset.product_ref == prod_id
).values(
metadata_type_ref=metadata_type_id,
)
)
# Initialise search fields.
# TODO: Isn't definition['metadata'] the same as metadata?
self._setup_product_fields(prod_id, name, search_fields, definition['metadata'],
concurrently=concurrently,
rebuild_view=True)
return prod_id
def insert_metadata_type(self, name, definition, concurrently=False):
res = self._connection.execute(
insert(MetadataType).values(
name=name,
definition=definition
)
)
type_id = res.inserted_primary_key[0]
search_fields = get_dataset_fields(definition)
self._setup_metadata_type_fields(
type_id, name, search_fields, concurrently=concurrently
)
def update_metadata_type(self, name, definition, concurrently=False):
res = self._connection.execute(
update(MetadataType).returning(MetadataType.id).where(
MetadataType.name == name
).values(
name=name,
definition=definition
)
)
type_id = res.first()[0]
search_fields = get_dataset_fields(definition)
self._setup_metadata_type_fields(
type_id, name, search_fields,
concurrently=concurrently,
rebuild_views=True,
)
return type_id
def check_dynamic_fields(self, concurrently=False, rebuild_views=False, rebuild_indexes=False):
_LOG.info('Checking dynamic views/indexes. (rebuild views=%s, indexes=%s)', rebuild_views, rebuild_indexes)
search_fields = {}
for metadata_type in self.get_all_metadata_types():
fields = get_dataset_fields(metadata_type['definition'])
search_fields[metadata_type['id']] = fields
self._setup_metadata_type_fields(
metadata_type['id'],
metadata_type['name'],
fields,
rebuild_indexes=rebuild_indexes,
rebuild_views=rebuild_views,
concurrently=concurrently,
)
def _setup_metadata_type_fields(self, id_, name, fields,
rebuild_indexes=False, rebuild_views=False, concurrently=True):
for product in self._get_products_for_metadata_type(id_):
self._setup_product_fields(
product['id'],
product['name'],
fields,
product['definition']['metadata'],
rebuild_view=rebuild_views,
rebuild_indexes=rebuild_indexes,
concurrently=concurrently
)
def _setup_product_fields(self, id_, name, fields, metadata_doc,
rebuild_indexes=False, rebuild_view=False, concurrently=True):
dataset_filter = and_(Dataset.archived == None, Dataset.product_ref == id_)
excluded_field_names = tuple(self._get_active_field_names(fields, metadata_doc))
dynamic.check_dynamic_fields(self._connection, concurrently, dataset_filter,
excluded_field_names, fields, name,
rebuild_indexes=rebuild_indexes, rebuild_view=rebuild_view)
@staticmethod
def _get_active_field_names(fields, metadata_doc):
for field in fields.values():
if hasattr(field, 'extract'):
try:
value = field.extract(metadata_doc)
if value is not None:
yield field.name
except (AttributeError, KeyError, ValueError):
continue
def get_all_products(self):
return self._connection.execute(
select(Product).order_by(Product.name.asc())
).fetchall()
def _get_products_for_metadata_type(self, id_):
return self._connection.execute(
select(Product).where(
Product.metadata_type_ref == id_
).order_by(
Product.name.asc()
)).fetchall()
def get_all_metadata_types(self):
return self._connection.execute(select(MetadataType).order_by(MetadataType.name.asc())).fetchall()
def get_locations(self, dataset_id):
return [
record[0]
for record in self._connection.execute(
select(
DatasetLocation.uri
).where(
DatasetLocation.dataset_ref == dataset_id
).where(
DatasetLocation.archived == None
).order_by(
DatasetLocation.added.desc(),
DatasetLocation.id.desc()
)
).fetchall()
]
def get_archived_locations(self, dataset_id):
"""
Return a list of uris and archived_times for a dataset
"""
return [
(location_uri, archived_time)
for location_uri, archived_time in self._connection.execute(
select(
DatasetLocation.uri, DatasetLocation.archived
).where(
DatasetLocation.dataset_ref == dataset_id
).where(
DatasetLocation.archived != None
).order_by(
DatasetLocation.added.desc()
)
).fetchall()
]
def remove_location(self, dataset_id, uri):
"""
Remove the given location for a dataset
:returns bool: Was the location deleted?
"""
scheme, body = _split_uri(uri)
res = self._connection.execute(
delete(DatasetLocation).where(
DatasetLocation.dataset_ref == dataset_id
).where(
DatasetLocation.uri_scheme == scheme
).where(
DatasetLocation.uri_body == body
)