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Support resistance mutation in oncokb-annotator #180

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zhx828 opened this issue Jun 15, 2022 · 0 comments
Open
2 tasks

Support resistance mutation in oncokb-annotator #180

zhx828 opened this issue Jun 15, 2022 · 0 comments
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zhx828 commented Jun 15, 2022 •
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This is an effort to support resistance mutation based on the upcoming structure. We currently do assign resistance to mutation, but we are about to separate the resistance from oncogenicity. A mutation can be oncogenic and resistance at the same time.
To do list:

  • Add column RESISTANCE_MUTATION, True, False in MAF/SV/CNA/Fusion annotations
  • Update the logics in the clinical annotator to use resistance field returned through API to calculate the RESISTANCE_MUTATIONS and #RESISTANCE_MUTATIONS
@zhx828 zhx828 transferred this issue from oncokb/oncokb Jun 15, 2022
@zhx828 zhx828 self-assigned this Jun 15, 2022
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