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InCellReader: ArrayIndexOutOfBoundsException #3895

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dominikl opened this issue Oct 24, 2022 · 0 comments · May be fixed by #3898
Open

InCellReader: ArrayIndexOutOfBoundsException #3895

dominikl opened this issue Oct 24, 2022 · 0 comments · May be fixed by #3898

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@dominikl
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See QA 31270

java.lang.ArrayIndexOutOfBoundsException: 0
	at loci.formats.in.InCellReader$MinimalInCellHandler.startElement(InCellReader.java:885)
	at org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown Source)
	at org.apache.xerces.parsers.AbstractXMLDocumentParser.emptyElement(Unknown Source)
	at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source)
	at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source)
	at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source)
	at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
	at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
	at org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
	at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
	at org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown Source)
	at org.apache.xerces.jaxp.SAXParserImpl.parse(Unknown Source)
	at javax.xml.parsers.SAXParser.parse(SAXParser.java:195)
	at loci.common.xml.XMLTools.parseXML(XMLTools.java:551)
	at loci.common.xml.XMLTools.parseXML(XMLTools.java:533)
	at loci.formats.in.InCellReader.initFile(InCellReader.java:378)
...
melissalinkert added a commit to melissalinkert/bioformats that referenced this issue Oct 28, 2022
@melissalinkert
InCell: use both "Point" and "offset_point" to calculate field count
f08ddd2 
Fixes ome#3895
@melissalinkert melissalinkert linked a pull request Oct 28, 2022 that will close this issue
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InCell 1000/2000 field count and plane metadata fixes melissalinkert/bioformats
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@dominikl