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phase-b-train-answer-type.yaml
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phase-b-train-answer-type.yaml
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# execute
# mvn exec:exec -Dconfig=bioasq.phase-b-train-answer-type
# to test the pipeline
configuration:
name: phase-b-train-answer-type
author: ziy
persistence-provider:
inherit: baseqa.persistence.local-sqlite-persistence-provider
collection-reader:
inherit: baseqa.collection.json.json-collection-reader
dataset: BIOASQ-QA
file:
- input/dryrun-a.json
- input/1b-1-a.json
- input/1b-2-a.json
- input/1b-3-a.json
- input/2b-1-a.json
- input/2b-2-a.json
- input/2b-3-a.json
- input/2b-4-a.json
- input/2b-5-a.json
- input/3b-1-a.json
- input/3b-2-a.json
- input/3b-3-a.json
- input/3b-4-a.json
# - input/3b-5-a.json
type: [factoid, list]
decorators: |
- inherit: bioasq.gs.bioasq-qa-gs-decorator
persistence-provider: |
inherit: baseqa.persistence.local-sqlite-persistence-provider
pipeline:
- inherit: ecd.phase
name: question-parse
options: |
- inherit: bioqa.question.parse.clearnlp-bioinformatics
- inherit: ecd.phase
name: question-concept-metamap
options: |
- inherit: bioqa.question.concept.metamap-cached
- inherit: ecd.phase
name: question-concept-tmtool
options: |
- inherit: bioqa.question.concept.tmtool-cached
- inherit: ecd.phase
name: question-concept-lingpipe-genia
options: |
- inherit: bioqa.question.concept.lingpipe-genia
- inherit: ecd.phase
name: question-focus
options: |
- inherit: baseqa.question.focus
- inherit: ecd.phase
name: concept-search-uts
options: |
- inherit: bioqa.evidence.concept.search-uts-cached
- inherit: ecd.phase
name: concept-merge
options: |
- inherit: baseqa.evidence.concept.merge
- inherit: ecd.phase
name: answer-type
options: |
- inherit: bioqa.answer_type.liblinear-train
- inherit: bioqa.answer_type.liblinear-null-train
# - inherit: bioqa.answer_type.train-weka-reptree
# - inherit: bioqa.answer_type.train-weka-reptree-null
# - inherit: bioqa.answer_type.train-weka-knn
# - inherit: bioqa.answer_type.train-weka-knn-null
# - inherit: bioqa.answer_type.train-meka-pcc
# - inherit: bioqa.answer_type.train-meka-pcc-null