/
phase-b-train-answer-collective-score.yaml
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/
phase-b-train-answer-collective-score.yaml
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# execute
# mvn exec:exec -Dconfig=bioasq.phase-b-train-answer-collective-score
# to test the pipeline
configuration:
name: phase-b-train-answer-collective-score
author: ziy
persistence-provider:
inherit: baseqa.persistence.local-sqlite-persistence-provider
collection-reader:
inherit: baseqa.collection.json.json-collection-reader
dataset: BIOASQ-QA
file:
- input/dryrun-b.json
- input/1b-1-b.json
- input/1b-2-b.json
- input/1b-3-b.json
- input/2b-1-b.json
- input/2b-2-b.json
- input/2b-3-b.json
- input/2b-4-b.json
- input/2b-5-b.json
- input/3b-1-b.json
- input/3b-2-b.json
- input/3b-3-b.json
- input/3b-4-b.json
# - input/3b-5-b.json
type: [list]
decorators: |
- inherit: bioasq.gs.bioasq-qa-gs-decorator
persistence-provider: |
inherit: baseqa.persistence.local-sqlite-persistence-provider
pipeline:
- inherit: ecd.phase
name: question-parse
options: |
- inherit: bioqa.question.parse.clearnlp-bioinformatics
- inherit: ecd.phase
name: question-concept-metamap
options: |
- inherit: bioqa.question.concept.metamap-cached
- inherit: ecd.phase
name: question-concept-tmtool
options: |
- inherit: bioqa.question.concept.tmtool-cached
- inherit: ecd.phase
name: question-concept-lingpipe-genia
options: |
- inherit: bioqa.question.concept.lingpipe-genia
- inherit: ecd.phase
name: question-focus
options: |
- inherit: baseqa.question.focus
- inherit: ecd.phase
name: passage-to-view
options: |
- inherit: baseqa.evidence.passage-to-view
- inherit: ecd.phase
name: evidence-parse
options: |
- inherit: bioqa.evidence.parse.clearnlp-bioinformatics
- inherit: ecd.phase
name: evidence-concept-metamap
options: |
- inherit: bioqa.evidence.concept.metamap-cached
- inherit: ecd.phase
name: evidence-concept-tmtool
options: |
- inherit: bioqa.evidence.concept.tmtool-cached
- inherit: ecd.phase
name: evidence-concept-lingpipe-genia
options: |
- inherit: bioqa.evidence.concept.lingpipe-genia
- inherit: ecd.phase
name: evidence-concept-frequent-phrase
options: |
- inherit: baseqa.evidence.concept.frequent-phrase
- inherit: ecd.phase
name: concept-search-uts
options: |
- inherit: bioqa.evidence.concept.search-uts-cached
- inherit: ecd.phase
name: concept-merge
options: |
- inherit: baseqa.evidence.concept.merge
- inherit: ecd.phase
name: answer-type
options: |
- inherit: bioqa.answer_type.load-cv-liblinear-null
- inherit: ecd.phase
name: answer-generate
options: |
- inherit: bioqa.answer.generate.generate
- inherit: ecd.phase
name: answer-modify
options: |
- inherit: baseqa.answer.modify.modify
- inherit: ecd.phase
name: answer-score
options: |
- inherit: bioqa.answer.score.cv-load-liblinear
- inherit: ecd.phase
name: answer-collective-score
options: |
- inherit: bioqa.answer.collective_score.liblinear-train
- inherit: bioqa.answer.collective_score.weka-cvr-train