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I am trying to install altanalyze in a conda environment on linux server. I tried to install directly by pip install AltAnalyze but there comes an error:
ERROR: Command errored out with exit status 1:
command: /data/bioinf/jyuan/miniconda/altanalyse/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-kzJa7S/sklearn/setup.py'"'"'; __file__='"'"'/tmp/pip-install-kzJa7S/sklearn/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-mMZ7G6
cwd: /tmp/pip-install-kzJa7S/sklearn/
Complete output (5 lines):
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-kzJa7S/sklearn/setup.py", line 9, in <module>
with open("README.md", encoding='utf-8') as f:
TypeError: 'encoding' is an invalid keyword argument for this function
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
import io
with io.open("README.md", encoding='utf-8') as f:
and install it before altanalyze but it seemed that sklearn is not supported now:
The 'sklearn' PyPI package is deprecated, use 'scikit-learn'
rather than 'sklearn' for pip commands.
Here is how to fix this error in the main use cases:
- use 'pip install scikit-learn' rather than 'pip install sklearn'
- replace 'sklearn' by 'scikit-learn' in your pip requirements files
(requirements.txt, setup.py, setup.cfg, Pipfile, etc ...)
- if the 'sklearn' package is used by one of your dependencies,
it would be great if you take some time to track which package uses
'sklearn' instead of 'scikit-learn' and report it to their issue tracker
- as a last resort, set the environment variable
SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True to avoid this error
More information is available at
https://github.com/scikit-learn/sklearn-pypi-package
If the previous advice does not cover your use case, feel free to report it at
https://github.com/scikit-learn/sklearn-pypi-package/issues/new
Is there any update on scikit-learn to fix the problem?
The text was updated successfully, but these errors were encountered:
I am trying to install altanalyze in a conda environment on linux server. I tried to install directly by
pip install AltAnalyze
but there comes an error:I tried to download the
sklearn-0.0.post9.tar.gz
, changed the line which occurs the problem according to:https://stackoverflow.com/questions/12541370/typeerror-encoding-is-an-invalid-keyword-argument-for-this-function
from
to
and install it before altanalyze but it seemed that
sklearn
is not supported now:Is there any update on scikit-learn to fix the problem?
The text was updated successfully, but these errors were encountered: