/
namelist_eAMUXL12.L121
224 lines (223 loc) · 15.2 KB
/
namelist_eAMUXL12.L121
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
! N. Jourdain, IGE-CNRS, Nov. 2021
!
! namelist for pre-processing NEMO simulations
!
! The new regional configuration is called the CHILD configuration (e.g. 'eAMUXL12.L121').
!
! It will be forced laterally by a PARENT configuration (e.g. eORCA025.L121) that is also used
! to extract the CHILD initial state and make consistent bathymetries at the boundaries.
!
! We currently use a global grid to extract the CHILD coordinates, it is referred to as the EXT grid.
!
! Example:
! eAMUXL12.L121 (CHILD) grid extracted form eORCA12.L75 (EXT),
! but eAMUXL12.L121 simulation embedded in eORCA025.L121 (PARENT, i.e. used as initial state and lateral boundary conditions)
!
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!-------------------------------------------------------------------------------------------------------------------------------
&general
config = 'eAMUXL12.L121' ! CHILD config name, e.g. 'WED12', 'AMU12', 'eAMUXL12.L121', etc
config_dir = '/scratch/shared/egige60/njourd/input/nemo_eAMUXL12.L121' ! directory where new netcdf files will be stored
/
!--------------------------------------------------------------------------------------------
&griddata
file_in_bathy_extract = '/store/njourd/eORCA12/eORCA12_bathy_fake_c0.3.nc' ! Bathy on the EXT grid from which we extract the regional domain (e.g. ORCA12).
file_in_coord_extract = '/store/njourd/eORCA12/eORCA12_coord_c0.3.nc' ! Coordinates of EXT grid from which we extract regional domain (e.g. ORCA12).
ln_coarse_bdy = .true. ! true to have the PARENT (coarser) bathymetry along lateral boundaries (then fill file_in_bathy_bdy)
file_in_bathy_bdy = '/store/njourd/eORCA025.L121/eORCA025.L121-OPM026_mesh_mask.nc' ! Bathy on the PARENT grid, i.e. corresponding to the lateral
! boundary conditions (e.g. eORCA025.L121).
ln_isfcav = .true. ! true if the domain includes ice shelves.
! Choose the domain bounds on global grid that is extracted (e.g. eORCA12; WARNING: will be rounded to closest point of the coarse grid if ln_coarse_bdy = true) :
!nn_imin_extract = 1739
nn_imin_extract = 1779
nn_imax_extract = 2426
nn_jmin_extract = 564
nn_jmax_extract = 1155
! Choose latitude and longitude near which you know that the two grids match
! (used to find the relationship between the two grids)
rn_latref = -65.0
rn_lonref = -120.0
/
!-------------------------------------------------------------------------------------------------------------------------------
&bathy_special
!- Only used with optional extract_bathy_special_lonlat.f90 or extract_bathy_special_stereo.f90 (to interpolate bathymetry from a dataset)
ln_dateline = .false. ! .true. if the domain includes the dateline (not tested),
! .false if the domain includes the Greenwich Meridian
nn_perio = 0 ! = 1 if the regional domain is periodic (not tested), =0 otherwise.
!-
file_spe_bathy = '/store/njourd/DATA/DATA_BATHYMETRY/BedMachineAntarctica-2020-10-08.nc'
!-
file_spe_isf_draft = '/store/njourd/DATA/DATA_BATHYMETRY/BedMachineAntarctica-2020-10-08.nc'
/
!-------------------------------------------------------------------------------------------------------------------------------
&init
!-
! PARENT mask file, according to nn_init (contains tmask, nav_lat, nav_lon, nav_lev) :
file_in_mask_extract = '/store/njourd/eORCA025.L121/eORCA025.L121-OPM026_mesh_mask.nc'
!-
! PARENT temperature file (same grid as file_in_mask_extract):
file_in_T = '/scratch/cnt0021/egi6035/SHARED/NEMO/OUTPUT/eORCA025.L121-OPM026/5d/1979/eORCA025.L121-OPM026_y1979m03d01.5d_gridT.nc'
!-
! PARENT salinity file (same grid as file_in_mask_extract) :
file_in_S = '/scratch/cnt0021/egi6035/SHARED/NEMO/OUTPUT/eORCA025.L121-OPM026/5d/1979/eORCA025.L121-OPM026_y1979m03d01.5d_gridT.nc'
!-
! PARENT sea ice file (only used by extract_istate_sea_ice.f90, put e.g. 'NOT USED' if no sea ice) :
file_in_SI = '/scratch/cnt0021/egi6035/SHARED/NEMO/OUTPUT/eORCA025.L121-OPM026/5d/1979/eORCA025.L121-OPM026_y1979m03d01.5d_icemod.nc'
!-
nn_eosmatch = 1 ! match between model equ. of state and istate equ. of state :
! = 0, regional config in TEOS-10 but file_in_T and file_in_S in EOS-80
! = 1, same equation of state everywhere
nn_smooth = 5 ! size of the box for running mean (=1 for no smoothing, 3,5,7,... for more smoothing)
!-- Parameters for extrapolation (where no values available from PARENT initial state) :
nn_iter = 200 ! [optional, default=100] nb of iterations for extrapolation to closest neighbour (=1 to use rn_temp and rn_sal instead of extrapolating)
nn_rsmax = 5 ! [optional, default=5] nb of points to which to extrapolate horizontally in one iteration (=0 to use rn_temp and rn_sal instead of extrapolating)
nn_rzmax = 1 ! [optional, default=1] nb of points to which to extrapolate vertically in one iteration if no horizontal neighbour (=0 to use rn_temp and rn_sal instead of extrapolating)
rn_temp = -1.0 ! default temperature (if no close neighbour after nn_iter iterations)
rn_sal = 34.0 ! default salinity (if no close neighbour after nn_iter iterations)
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy
nn_bdy_east = 1 ! number of along-Y segments constituting the EASTERN boundary
nn_bdy_west = 1 ! number of along-Y segments constituting the WESTERN boundary
nn_bdy_north = 1 ! number of along-X segments constituting the NORTHERN boundary
nn_bdy_south = 0 ! number of along-X segments constituting the SOUTHERN boundary
nn_harm = 18 ! number of tidal harmonics to prescribe along the boundaries (0 if no tides in use)
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_east
ii_bdy_east(1) = 653 ! i-index for eastern boundary (ocean T-pt, standard = mx-1)
j1_bdy_east(1) = 2 ! lowest j-index for eastern boundary (ocean T-pt, standard = 2)
j2_bdy_east(1) = 596 ! highest j-index for eastern boundary (ocean T-pt, standard = my-1)
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_west
ii_bdy_west(1) = 2 ! i-index for western boundary (ocean T-pt, standard = 2)
j1_bdy_west(1) = 2 ! lowest j-index for western boundary (ocean T-pt, standard = 2)
j2_bdy_west(1) = 596 ! highest j-index for western boundary (ocean T-pt, standard = my-1)
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_north
i1_bdy_north(1) = 3 ! lowest i-index for northern boundary (ocean T-pt, standard = 2, or = 3 if full bdy_west, or = 1 if periodic)
i2_bdy_north(1) = 652 ! highest i-index for northern boundary (ocean T-pt, standard = mx-1, or = mx-2 if full bdy_east, or = mx if periodic)
jj_bdy_north(1) = 596 ! j-index for northern boundary (ocean T-pt, standard = my-1)
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_south
i1_bdy_south(1) = 0 ! lowest i-index for southern boundary (ocean T-pt, standard = 2, or = 3 if full bdy_west, or = 1 if periodic)
i2_bdy_south(1) = 0 ! highest i-index for southern boundary (ocean T-pt, standard = mx-1, or = mx-2 if full bdy_east, or = mx if periodic)
jj_bdy_south(1) = 0 ! j-index for southern boundary (ocean T-pt, standard = 2)
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_data
! Dataset used as lateral boundary conditions (same grid as file_in_mask_extract and as file_in_bathy_bdy if it is used)
! The dataset is assumed to be in files of one of the following types (YYYY is 4-digit year, MM 2-digit month and DD 2-digit day):
!
! <data_dir>/YYYY/<data_prefix>YYYY<sep1>MM<sep2>DD<data_suffix>.nc
! or: <data_dir>/YYYY/<data_prefix>YYYY<sep1>MM<data_suffix>.nc
! or: <data_dir>/<data_prefix>YYYY<sep1>MM<sep2>DD<data_suffix>.nc
! or: <data_dir>/<data_prefix>YYYY<sep1>MM<data_suffix>.nc
!
data_dir = '/scratch/cnt0021/egi6035/SHARED/NEMO/OUTPUT/eORCA025.L121-OPM026/5d'
data_prefix = 'eORCA025.L121-OPM026_y'
sep1 = 'm'
sep2 = 'd'
data_suffix_T = '.5d_gridT' ! suffix for temperature
data_suffix_S = '.5d_gridT' ! suffix for salinity
data_suffix_U = '.5d_gridU' ! suffix for zonal velocity
data_suffix_V = '.5d_gridV' ! suffix for meridional velocity
data_suffix_ssh = '.5d_gridT' ! suffix for SSH
data_suffix_ice = '.5d_icemod'! suffix for sea ice variables
file_data_mask = '/store/njourd/eORCA025.L121/eORCA025.L121-OPM026_mesh_mask.nc' ! Mask file of parent grid (PAR)
! (contains umask, vmask)
file_data_zgr = '/store/njourd/eORCA025.L121/eORCA025.L121-OPM026_mesh_mask.nc' ! PAR vertical mesh sizes (for btp vel.)
! (contains e3u_0 or e3u and e3v_0 or e3v)
file_data_hgr = '/store/njourd/eORCA025.L121/eORCA025.L121-OPM026_mesh_mask.nc' ! PAR horizontal mesh sizes (for btp vel.)
nn_yeari = 2003 ! initial year for BDYs
nn_yearf = 2004 ! final year for BDYs
nn_bdy_eosmatch = 1 ! match between model equ. of state and BDY equ. of state :
! = 0, regional config in TEOS-10 but file_in_T and file_in_S in EOS-80
! = 1, same equation of state everywhere
/
!-------------------------------------------------------------------------------------------------------------------------------
&bdy_tide
tide_dir = '/store/CT1/egi6035/njourd/DATA/FES2012'
! name of the nn_harm tidal constituents :
harm( 1) = 'M2 ' ! name of 1st tidal constituent (4 characters)
harm( 2) = 'S2 ' ! name of 2nd tidal constituent (4 characters)
harm( 3) = 'K1 ' ! " " "
harm( 4) = 'O1 ' ! " " "
harm( 5) = 'N2 ' ! " " "
harm( 6) = 'K2 '
harm( 7) = 'P1 '
harm( 8) = 'Q1 '
harm( 9) = 'S1 '
harm(10) = '2N2 '
harm(11) = 'Mu2 '
harm(12) = 'Nu2 '
harm(13) = 'L2 '
harm(14) = 'Mtm '
harm(15) = 'Mm '
harm(16) = 'Mf '
harm(17) = 'T2 '
harm(18) = 'M4 '
/
!-------------------------------------------------------------------------------------------------------------------------------
&sss_resto
! Dataset used as lateral boundary conditions (same grid as file_in_mask_extract and as file_in_bathy_bdy if it is used)
! The sss dataset is assumed to be in files of one of the following types (YYYY is 4-digit year, MM 2-digit month and DD 2-digit day):
!
! <sss_dir>/YYYY/<sss_prefix>YYYY<sss_sep1>MM<sss_sep2>DD<sss_suffix>.nc
! or: <sss_dir>/YYYY/<sss_prefix>YYYY<sss_sep1>MM<sss_suffix>.nc
! or: <sss_dir>/<sss_prefix>YYYY<sss_sep1>MM<sss_sep2>DD<sss_suffix>.nc
! or: <sss_dir>/<sss_prefix>YYYY<sss_sep1>MM<sss_suffix>.nc
! or: <sss_dir>/<sss_prefix>.nc [ for climatology ]
!
sss_dir = '/scratch/cnt0021/egi6035/SHARED/NEMO/OUTPUT/eORCA025.L121-OPM026/5d'
sss_prefix = 'eORCA025.L121-OPM026_y'
sss_sep1 = 'm'
sss_sep2 = 'd'
sss_suffix = '.5d_gridT' ! suffix for temperature
nn_sss_yeari = 2005 ! First year to proceed
nn_sss_yearf = 2018 ! Last year to proceed
nn_sss_eosmatch = 1 ! match between model equ. of state and SSS restoring file :
! = 0, regional config in TEOS-10 but SSS file in EOS-80
! = 1, same equation of state everywhere
file_sss_mask = '/store/njourd/eORCA025.L121/eORCA025.L121-OPM026_mesh_mask.nc' ! Mask file of parent grid (PAR)
! (contains tmask)
/
!-------------------------------------------------------------------------------------------------------------------------------
&runoff
! Dataset used as lateral boundary conditions (same grid as file_in_mask_extract and as file_in_bathy_bdy if it is used)
! The sss dataset is assumed to be in files of one of the following types (YYYY is 4-digit year, MM 2-digit month and DD 2-digit day):
!
! <rrr_dir>/YYYY/<rrr_prefix>YYYY<rrr_sep1>MM<rrr_sep2>DD<rrr_suffix>.nc
! or: <rrr_dir>/YYYY/<rrr_prefix>YYYY<rrr_sep1>MM<rrr_suffix>.nc
! or: <rrr_dir>/<rrr_prefix>YYYY<rrr_sep1>MM<rrr_sep2>DD<rrr_suffix>.nc
! or: <rrr_dir>/<rrr_prefix>YYYY<rrr_sep1>MM<rrr_suffix>.nc
! or: <rrr_dir>/<rrr_prefix>.nc [ for climatology ]
!
rrr_dir = '/scratch/cnt0021/egi6035/SHARED/NEMO/OUTPUT/eORCA025.L121-OPM026/5d'
rrr_prefix = 'eORCA025.L121-OPM026_y'
rrr_sep1 = 'm'
rrr_sep2 = 'd'
rrr_suffix = '.5d_flxT'
nn_rrr_yeari = 1979 ! First year to proceed
nn_rrr_yearf = 2004 ! Last year to proceed
nn_band = 50 ! Thickness of the band along the coast where we don't do SSS restoring (in nb of grid pts)
file_mask_runoff = '/store/njourd/eORCA025.L121/eORCA025.L121-OPM026_mesh_mask.nc' ! mask file of parent grid (contains tmask)
/
!-------------------------------------------------------------------------------------------------------------------------------
&chloro
file_chloro_in = '/store/njourd/eORCA025.L121/chlorophyl_v0.0.nc' ! chlorophyll on parent grid (if used with extract_chloro)
! or on lon-lat grid (if used with extract_chloro_from_lonlat)
rn_chla = 0.30 ! default CHLA (to fill places in the child domain uncovered in the parent or lon-lat file)
!- The two following variables are only used for extract_chloro_from_lonlat :
ln_datelinex = .false. ! .true. if the domain includes the dateline (not tested),
! .false if the domain includes the Greenwich Meridian
nn_periox = 1 ! = 1 if the lon-lat dataset is periodic in longitude, =0 otherwise.
/
!-------------------------------------------------------------------------------------------------------------------------------
&zdfiwm
file_zdfiwm_in = '/store/njourd/eORCA025.L121/eORCA025_iwm_b0.2_v0.0.nc'
/