Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Allow a prepared ENA metadata samplesheet as input #77

Open
Midnighter opened this issue Mar 7, 2022 · 1 comment
Open

Allow a prepared ENA metadata samplesheet as input #77

Midnighter opened this issue Mar 7, 2022 · 1 comment
Labels
enhancement Improvement for existing functionality

Comments

@Midnighter
Copy link
Contributor

Description of feature

I've created a branch https://github.com/nf-core/fetchngs/tree/skip-runinfo where one can skip the first step. So instead of providing a list of IDs for which metadata is fetched, provide the metadata directly as input and skip that step. It works but was just a quick hack. If this is a generally desirable feature I can code it up in a better way. Maybe using input_type == 'metadata' instead of a new skip_runinfo parameter.

@Midnighter Midnighter added the enhancement Improvement for existing functionality label Mar 7, 2022
@priyanka-surana
Copy link

It would be useful for our team too. 👍🏼 from me if you decide to implement this feature.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement Improvement for existing functionality
Projects
None yet
Development

No branches or pull requests

2 participants