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check out extensions for input files #256

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maxulysse opened this issue Jan 25, 2024 · 1 comment
Open

check out extensions for input files #256

maxulysse opened this issue Jan 25, 2024 · 1 comment
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@maxulysse
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Description of the bug

with -r 1.11.0

No extension fails as expected

ERROR ~ ERROR: Validation of pipeline parameters failed!

 -- Check '.nextflow.log' file for details
The following invalid input values have been detected:

* --input: string [id] does not match pattern ^\S+\.(csv|tsv|txt)$ (id)

but txt fails as well:

ERROR ~ Could not derive file type from /home/max/workspace/tests/id.txt. Please specify the file extension (CSV, TSV, YML and YAML are supported).

Command used and terminal output

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@maxulysse maxulysse added the bug Something isn't working label Jan 25, 2024
@drpatelh
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Thanks @maxulysse ! Are you able to dig a little further to figure out why this is happening please?

Link to the pattern in the schema:

"pattern": "^\\S+\\.(csv|tsv|txt)$",

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