{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":150448201,"defaultBranch":"master","name":"ampliseq","ownerLogin":"nf-core","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-09-26T15:24:54.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/35520196?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1715254657.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"c0461919005927208950590f04f75ee5d88d6949","ref":"refs/heads/nf-core-template-merge-2.14.1","pushedAt":"2024-05-09T11:37:37.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nf-core-bot","name":"nf-core bot","path":"/nf-core-bot","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42236957?s=80&v=4"},"commit":{"message":"Template update for nf-core/tools version 2.14.1","shortMessageHtmlLink":"Template update for nf-core/tools version 2.14.1"}},{"before":"795eac8fbedf73eefb88f178cf2bcb59d6568b03","after":"c0461919005927208950590f04f75ee5d88d6949","ref":"refs/heads/TEMPLATE","pushedAt":"2024-05-09T11:37:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nf-core-bot","name":"nf-core bot","path":"/nf-core-bot","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42236957?s=80&v=4"},"commit":{"message":"Template update for nf-core/tools version 2.14.1","shortMessageHtmlLink":"Template update for nf-core/tools version 2.14.1"}},{"before":null,"after":"795eac8fbedf73eefb88f178cf2bcb59d6568b03","ref":"refs/heads/nf-core-template-merge-2.14.0","pushedAt":"2024-05-08T13:58:14.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nf-core-bot","name":"nf-core bot","path":"/nf-core-bot","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42236957?s=80&v=4"},"commit":{"message":"Template update for nf-core/tools version 2.14.0","shortMessageHtmlLink":"Template update for nf-core/tools version 2.14.0"}},{"before":"0d8dce49b81c2ef6e13c82fecd00a195ea4927bd","after":"795eac8fbedf73eefb88f178cf2bcb59d6568b03","ref":"refs/heads/TEMPLATE","pushedAt":"2024-05-08T13:58:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nf-core-bot","name":"nf-core bot","path":"/nf-core-bot","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42236957?s=80&v=4"},"commit":{"message":"Template update for nf-core/tools version 2.14.0","shortMessageHtmlLink":"Template update for nf-core/tools version 2.14.0"}},{"before":"4707d384dc73406255a2612d4c128748a96244c8","after":"6b1bc8f1896c7143fb5066e8d110868c64d384fc","ref":"refs/heads/dev","pushedAt":"2024-04-03T14:06:53.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #730 from d4straub/bump-version-2.10.0dev\n\nAfter release PR - bump version to 2.10.0dev","shortMessageHtmlLink":"Merge pull request #730 from d4straub/bump-version-2.10.0dev"}},{"before":"f3c97e1b9088b229d4bcdeb2f9a25f21d6552f8b","after":"717abb8a0372c1821f5837ab3a902be90faf4cba","ref":"refs/heads/master","pushedAt":"2024-04-03T10:24:25.000Z","pushType":"pr_merge","commitsCount":128,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #725 from nf-core/dev\n\nRelease 2.9.0","shortMessageHtmlLink":"Merge pull request #725 from nf-core/dev"}},{"before":"b68e479abba1bc416401afc8bf564f93b58f9772","after":"4707d384dc73406255a2612d4c128748a96244c8","ref":"refs/heads/dev","pushedAt":"2024-04-02T13:28:32.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #729 from d4straub/pipesidle-container\n\nRetrieve Sidle container from quay.io/nf-core instead of docker.io/d4straub","shortMessageHtmlLink":"Merge pull request #729 from d4straub/pipesidle-container"}},{"before":"4a11f039ac76e50aadd3a90380544ae3eaeefb51","after":"b68e479abba1bc416401afc8bf564f93b58f9772","ref":"refs/heads/dev","pushedAt":"2024-04-02T10:28:26.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #728 from d4straub/update-nextflowschema\n\nUpdate nextflowschema","shortMessageHtmlLink":"Merge pull request #728 from d4straub/update-nextflowschema"}},{"before":"53cb658eb5849c1fdbc366a8e89531430275152f","after":"4a11f039ac76e50aadd3a90380544ae3eaeefb51","ref":"refs/heads/dev","pushedAt":"2024-04-02T09:00:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Fix linting in release-announcements.yml","shortMessageHtmlLink":"Fix linting in release-announcements.yml"}},{"before":"a060f2fd30224e72ad28cbf148bd58711b5f6a06","after":"53cb658eb5849c1fdbc366a8e89531430275152f","ref":"refs/heads/dev","pushedAt":"2024-04-02T06:59:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Update nextflow.config\n\nCo-authored-by: Matthias Hörtenhuber ","shortMessageHtmlLink":"Update nextflow.config"}},{"before":"3f2f46600838809a318f42ca969c8c0e589e30ee","after":"a060f2fd30224e72ad28cbf148bd58711b5f6a06","ref":"refs/heads/dev","pushedAt":"2024-04-02T06:58:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Apply suggestions from code review\n\nCo-authored-by: Matthias Hörtenhuber ","shortMessageHtmlLink":"Apply suggestions from code review"}},{"before":"08db42e3bd822063208ce69f1d5417c0fcb7840b","after":"3f2f46600838809a318f42ca969c8c0e589e30ee","ref":"refs/heads/dev","pushedAt":"2024-03-28T13:42:31.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #726 from d4straub/fix-Download-Pipeline-Workflow\n\nfix Download Pipeline Workflow","shortMessageHtmlLink":"Merge pull request #726 from d4straub/fix-Download-Pipeline-Workflow"}},{"before":"db4cc0aa23b88d78392f98808287a75c70556f32","after":"08db42e3bd822063208ce69f1d5417c0fcb7840b","ref":"refs/heads/dev","pushedAt":"2024-03-28T07:14:31.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #724 from d4straub/bump-version-2.9.0\n\nbump version to 2.9.0","shortMessageHtmlLink":"Merge pull request #724 from d4straub/bump-version-2.9.0"}},{"before":"43378b5fb3a99946120874be1c120ce77f065762","after":"db4cc0aa23b88d78392f98808287a75c70556f32","ref":"refs/heads/dev","pushedAt":"2024-03-27T12:29:03.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #723 from d4straub/update-param-docu-2.9.0\n\nUpdate documentation","shortMessageHtmlLink":"Merge pull request #723 from d4straub/update-param-docu-2.9.0"}},{"before":"0c24ff3a8cc67ed462e6bc8428dec7824014a6e1","after":"43378b5fb3a99946120874be1c120ce77f065762","ref":"refs/heads/dev","pushedAt":"2024-03-26T16:00:11.000Z","pushType":"pr_merge","commitsCount":8,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #720 from d4straub/update-modules\n\nUpdate nf-core modules, DADA2, and Phyloseq","shortMessageHtmlLink":"Merge pull request #720 from d4straub/update-modules"}},{"before":"0926dc2132176788d8fd92053dca0c2c1676d694","after":"0c24ff3a8cc67ed462e6bc8428dec7824014a6e1","ref":"refs/heads/dev","pushedAt":"2024-03-26T15:33:57.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #719 from d4straub/export-all-versions\n\nExport all process software versions","shortMessageHtmlLink":"Merge pull request #719 from d4straub/export-all-versions"}},{"before":"a9a6d8269cc2b7176dd7761ff41ee3a3a2ac68b1","after":"0926dc2132176788d8fd92053dca0c2c1676d694","ref":"refs/heads/dev","pushedAt":"2024-03-26T15:33:13.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #722 from vaulot/dev\n\nUpdate summarize_barrnap.py","shortMessageHtmlLink":"Merge pull request #722 from vaulot/dev"}},{"before":"c828ef42a8e539a8f240b36dfc6f26a235a45557","after":"a9a6d8269cc2b7176dd7761ff41ee3a3a2ac68b1","ref":"refs/heads/dev","pushedAt":"2024-03-26T14:24:49.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #721 from d4straub/fix-groovyjarjarantlr4.v4.runtime.LexerNoViableAltException\n\nFix groovyjarjarantlr4.v4.runtime.LexerNoViableAltException","shortMessageHtmlLink":"Merge pull request #721 from d4straub/fix-groovyjarjarantlr4.v4.runti…"}},{"before":"152331dbbe981f45330c1dc33f4be43924e9e354","after":"c828ef42a8e539a8f240b36dfc6f26a235a45557","ref":"refs/heads/dev","pushedAt":"2024-03-26T08:01:35.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #718 from d4straub/fix-itsx-short-sequences\n\nRequire a minimum sequence length of 50bp after ITSx","shortMessageHtmlLink":"Merge pull request #718 from d4straub/fix-itsx-short-sequences"}},{"before":"f4ac5f6cd77268fb9b701ed487adfc9d6d0a3538","after":"152331dbbe981f45330c1dc33f4be43924e9e354","ref":"refs/heads/dev","pushedAt":"2024-03-25T14:02:47.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #717 from d4straub/fix-file-sorting-wit-radix\n\nFix file sorting with radix method","shortMessageHtmlLink":"Merge pull request #717 from d4straub/fix-file-sorting-wit-radix"}},{"before":"d05e42ea645696bec011fde03ca4e9c26df6cf45","after":"f4ac5f6cd77268fb9b701ed487adfc9d6d0a3538","ref":"refs/heads/dev","pushedAt":"2024-03-25T11:29:20.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #715 from d4straub/fix-vsearch-cluster\n\nfix vsearch cluster filtering","shortMessageHtmlLink":"Merge pull request #715 from d4straub/fix-vsearch-cluster"}},{"before":"922b3911350022bbadd4f1a49af23edfb3a25def","after":"d05e42ea645696bec011fde03ca4e9c26df6cf45","ref":"refs/heads/dev","pushedAt":"2024-03-20T09:40:46.000Z","pushType":"pr_merge","commitsCount":17,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #713 from d4straub/update-template-2.13.1\n\nUpdate template 2.13.1","shortMessageHtmlLink":"Merge pull request #713 from d4straub/update-template-2.13.1"}},{"before":"6e727a4ae4aab9271bd6d572cc5658eea3dbd06a","after":"922b3911350022bbadd4f1a49af23edfb3a25def","ref":"refs/heads/dev","pushedAt":"2024-03-18T12:57:23.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #711 from danilodileo/fix-gtdb-bacteria-info-only\n\nFix gtdb bacteria info only","shortMessageHtmlLink":"Merge pull request #711 from danilodileo/fix-gtdb-bacteria-info-only"}},{"before":"e366469ec7c72f194fa591a0b19437778881a0d1","after":"6e727a4ae4aab9271bd6d572cc5658eea3dbd06a","ref":"refs/heads/dev","pushedAt":"2024-03-18T12:19:34.000Z","pushType":"pr_merge","commitsCount":31,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #702 from d4straub/add-multiple-regions-analysis\n\nAdd multiple regions analysis / 5R / SMURF / q2-sidle","shortMessageHtmlLink":"Merge pull request #702 from d4straub/add-multiple-regions-analysis"}},{"before":"2a23b1b926699be60738d97bbc41bd298f218bce","after":"e366469ec7c72f194fa591a0b19437778881a0d1","ref":"refs/heads/dev","pushedAt":"2024-03-18T09:32:12.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #710 from danilodileo/remove-phytoref\n\nRemove phytoref","shortMessageHtmlLink":"Merge pull request #710 from danilodileo/remove-phytoref"}},{"before":"2aa390c9b54e7f136b8b0c484cc3d1801dafa117","after":"2a23b1b926699be60738d97bbc41bd298f218bce","ref":"refs/heads/dev","pushedAt":"2024-02-06T09:22:07.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #700 from d4straub/export-more-qza\n\nAdded --save_intermediates","shortMessageHtmlLink":"Merge pull request #700 from d4straub/export-more-qza"}},{"before":"bc1a10efa7fc8d78e0c28ddda70d6eb2d56b65b1","after":"2aa390c9b54e7f136b8b0c484cc3d1801dafa117","ref":"refs/heads/dev","pushedAt":"2024-02-06T09:00:54.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #699 from d4straub/fix-readme-and-nextflow_schema\n\nFix README","shortMessageHtmlLink":"Merge pull request #699 from d4straub/fix-readme-and-nextflow_schema"}},{"before":"2da3147c2adf06bb2540c0d7fe79b2524129b174","after":"bc1a10efa7fc8d78e0c28ddda70d6eb2d56b65b1","ref":"refs/heads/dev","pushedAt":"2024-02-01T13:57:43.000Z","pushType":"pr_merge","commitsCount":9,"pusher":{"login":"d4straub","name":"Daniel Straub","path":"/d4straub","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42973691?s=80&v=4"},"commit":{"message":"Merge pull request #697 from d4straub/merging-template-updates-2.12\n\nMerging template updates 2.12","shortMessageHtmlLink":"Merge pull request #697 from d4straub/merging-template-updates-2.12"}},{"before":null,"after":"0d8dce49b81c2ef6e13c82fecd00a195ea4927bd","ref":"refs/heads/nf-core-template-merge-2.12","pushedAt":"2024-01-29T14:50:29.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"nf-core-bot","name":"nf-core bot","path":"/nf-core-bot","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42236957?s=80&v=4"},"commit":{"message":"Template update for nf-core/tools version 2.12","shortMessageHtmlLink":"Template update for nf-core/tools version 2.12"}},{"before":"127b88a10216204010fb514aeb6bd1682cdeb96c","after":"0d8dce49b81c2ef6e13c82fecd00a195ea4927bd","ref":"refs/heads/TEMPLATE","pushedAt":"2024-01-29T14:50:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nf-core-bot","name":"nf-core bot","path":"/nf-core-bot","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42236957?s=80&v=4"},"commit":{"message":"Template update for nf-core/tools version 2.12","shortMessageHtmlLink":"Template update for nf-core/tools version 2.12"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAERY2Q-QA","startCursor":null,"endCursor":null}},"title":"Activity · nf-core/ampliseq"}