{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":234936988,"defaultBranch":"master","name":"ncov","ownerLogin":"nextstrain","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-01-19T17:23:17.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/22159334?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1717055048.0","currentOid":""},"activityList":{"items":[{"before":"8e944cd147f03d5577031933fbd88e240a2a6885","after":"6f58ff7a049fce61d714592d841c718f6d0062ba","ref":"refs/heads/master","pushedAt":"2024-06-03T19:08:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trvrb","name":"Trevor Bedford","path":"/trvrb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1176109?s=80&v=4"},"commit":{"message":"Update Pango color ordering\n\nThe previous Pango color ordering hadn't been updated since March 9 resulting in a lot gray for recent lineages. Here, I grabbed the JSON from nextstrain.org/staging/nextclade/sars-cov-2/ and cut out Pango lineage names in the order they appear in the tree.","shortMessageHtmlLink":"Update Pango color ordering"}},{"before":"a4d5961e8babb6c4f26df8f8ff740f9c36934862","after":"8e944cd147f03d5577031933fbd88e240a2a6885","ref":"refs/heads/master","pushedAt":"2024-06-03T18:51:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trvrb","name":"Trevor Bedford","path":"/trvrb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1176109?s=80&v=4"},"commit":{"message":"Update mutational distance map\n\nThis uses latest model run of PyR0 from May 27 to update \"mutational fitness\".","shortMessageHtmlLink":"Update mutational distance map"}},{"before":"3ab3ed56dcd8de02b611ef018e9842246eebd6e0","after":"a4d5961e8babb6c4f26df8f8ff740f9c36934862","ref":"refs/heads/master","pushedAt":"2024-06-03T18:49:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trvrb","name":"Trevor Bedford","path":"/trvrb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1176109?s=80&v=4"},"commit":{"message":"Update outliers","shortMessageHtmlLink":"Update outliers"}},{"before":"e20ad52afb7e01c37904a655fbbee8c24410d577","after":"03a0bf39b7630cb3dd74000602b0c02ec64b0a16","ref":"refs/heads/inline-root-sequence","pushedAt":"2024-05-30T07:50:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rneher","name":"Richard Neher","path":"/rneher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8379168?s=80&v=4"},"commit":{"message":"remove root sequence from expected outputs","shortMessageHtmlLink":"remove root sequence from expected outputs"}},{"before":null,"after":"e20ad52afb7e01c37904a655fbbee8c24410d577","ref":"refs/heads/inline-root-sequence","pushedAt":"2024-05-30T07:44:08.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"rneher","name":"Richard Neher","path":"/rneher","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8379168?s=80&v=4"},"commit":{"message":"inline root sequence","shortMessageHtmlLink":"inline root sequence"}},{"before":null,"after":"835481da34d7bcda0eda690607730d72eb8763a8","ref":"refs/heads/victorlin/tmp-weighted-country-uniform-division","pushedAt":"2024-05-20T23:49:51.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 group by division for uniform sampling on that level","shortMessageHtmlLink":"🚧 group by division for uniform sampling on that level"}},{"before":"5d2c6919e543179aff31717dbdcd980a1f1f68e3","after":"6b6cd2b5cfb96b5a4eaa3a7fdfc9585a6a367e8c","ref":"refs/heads/victorlin/weighted-sampling","pushedAt":"2024-05-10T18:45:01.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 Use country/week case counts as weights","shortMessageHtmlLink":"🚧 Use country/week case counts as weights"}},{"before":"5ca1afa129268f743e0a76c3337d00364116353e","after":"5d2c6919e543179aff31717dbdcd980a1f1f68e3","ref":"refs/heads/victorlin/weighted-sampling","pushedAt":"2024-05-10T16:45:32.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 Use country/week case counts as weights","shortMessageHtmlLink":"🚧 Use country/week case counts as weights"}},{"before":"1afb6d7e5278bad4a69801411d791d5b2cd7d5e8","after":"5ca1afa129268f743e0a76c3337d00364116353e","ref":"refs/heads/victorlin/weighted-sampling","pushedAt":"2024-05-09T23:53:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 Use country/week case counts as weights","shortMessageHtmlLink":"🚧 Use country/week case counts as weights"}},{"before":"b534d94bce0ec7d11cd6ae5b1b7252f582920f27","after":"1afb6d7e5278bad4a69801411d791d5b2cd7d5e8","ref":"refs/heads/victorlin/weighted-sampling","pushedAt":"2024-05-03T23:04:17.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 [DROP] run asia builds only","shortMessageHtmlLink":"🚧 [DROP] run asia builds only"}},{"before":"5185987fc4aededfc107f1f7715944d42b4d7975","after":"b534d94bce0ec7d11cd6ae5b1b7252f582920f27","ref":"refs/heads/victorlin/weighted-sampling","pushedAt":"2024-05-03T22:52:28.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 [DROP] run asia builds only","shortMessageHtmlLink":"🚧 [DROP] run asia builds only"}},{"before":"e7b128144ac2e6ce4df2a2871539018fd9b1a248","after":"5185987fc4aededfc107f1f7715944d42b4d7975","ref":"refs/heads/victorlin/weighted-sampling","pushedAt":"2024-05-03T22:50:23.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 [DROP] run asia builds only","shortMessageHtmlLink":"🚧 [DROP] run asia builds only"}},{"before":"165f89ba2e1597ce452090a8ec7490100807d654","after":"47996a10d24d90433c5ebc87d746b48a647298d6","ref":"refs/heads/victorlin/update-rebuild-image-descriptions","pushedAt":"2024-05-03T18:27:42.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"Add example image descriptors","shortMessageHtmlLink":"Add example image descriptors"}},{"before":null,"after":"165f89ba2e1597ce452090a8ec7490100807d654","ref":"refs/heads/victorlin/update-rebuild-image-descriptions","pushedAt":"2024-05-03T18:24:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"Add example image descriptors","shortMessageHtmlLink":"Add example image descriptors"}},{"before":"f5f52d9b97a4d37e22a300e3ad61fa2eca052732","after":"e7b128144ac2e6ce4df2a2871539018fd9b1a248","ref":"refs/heads/victorlin/weighted-sampling","pushedAt":"2024-05-03T17:58:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 [DROP] run asia builds only","shortMessageHtmlLink":"🚧 [DROP] run asia builds only"}},{"before":"a4cade5befbe0c34109415f63afda4c4e5ff232e","after":"f5f52d9b97a4d37e22a300e3ad61fa2eca052732","ref":"refs/heads/victorlin/weighted-sampling","pushedAt":"2024-05-02T22:57:27.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 Use population-based weighted sampling for Asia builds","shortMessageHtmlLink":"🚧 Use population-based weighted sampling for Asia builds"}},{"before":"8fd830e3f87ce25db236a55e0d9467fcf6a3936c","after":"a4cade5befbe0c34109415f63afda4c4e5ff232e","ref":"refs/heads/victorlin/weighted-sampling","pushedAt":"2024-05-02T21:42:41.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 Use population-based weighted sampling for Asia builds","shortMessageHtmlLink":"🚧 Use population-based weighted sampling for Asia builds"}},{"before":null,"after":"8fd830e3f87ce25db236a55e0d9467fcf6a3936c","ref":"refs/heads/victorlin/weighted-sampling","pushedAt":"2024-05-02T21:40:16.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 DROP: Use Docker image with weighted sampling","shortMessageHtmlLink":"🚧 DROP: Use Docker image with weighted sampling"}},{"before":"067fc5e331306f06c777ff11ea2546cf8c16539f","after":null,"ref":"refs/heads/victorlin/asia-weekly-grouping","pushedAt":"2024-05-02T00:10:43.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"}},{"before":"efc0b81de52cb3b716068dddfc99e0a7be734e8a","after":"3ab3ed56dcd8de02b611ef018e9842246eebd6e0","ref":"refs/heads/master","pushedAt":"2024-05-02T00:10:43.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"Merge pull request #1104: Group by week for 1m/2m Asia builds","shortMessageHtmlLink":"Merge pull request #1104: Group by week for 1m/2m Asia builds"}},{"before":null,"after":"067fc5e331306f06c777ff11ea2546cf8c16539f","ref":"refs/heads/victorlin/asia-weekly-grouping","pushedAt":"2024-05-01T23:54:06.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"Group by week for 1m/2m Asia builds\n\nTo be consistent with other 1m/2m builds (6a94e46896909fd292ba865355d5759875ba700c).","shortMessageHtmlLink":"Group by week for 1m/2m Asia builds"}},{"before":"a8f66bb0bef78db9fad4c3b1e6df3ca3aa164814","after":"3b60b825f7d0c3f94d40f202180c9ab492dca623","ref":"refs/heads/victorlin/generate-subsampling-config","pushedAt":"2024-05-01T23:39:48.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 Use population-based weighted sampling for Asia builds","shortMessageHtmlLink":"🚧 Use population-based weighted sampling for Asia builds"}},{"before":"c3dfb153f441b560f4223cab3420aa3a7d968740","after":"efc0b81de52cb3b716068dddfc99e0a7be734e8a","ref":"refs/heads/master","pushedAt":"2024-04-24T05:15:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"trvrb","name":"Trevor Bedford","path":"/trvrb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1176109?s=80&v=4"},"commit":{"message":"Update exclude","shortMessageHtmlLink":"Update exclude"}},{"before":"8d645c65158444a6cb0b3e6f9cee981aeef763da","after":"a8f66bb0bef78db9fad4c3b1e6df3ca3aa164814","ref":"refs/heads/victorlin/generate-subsampling-config","pushedAt":"2024-04-17T18:53:25.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 nested sample definitions\n\nThis gets rid of the need to manually calculate weight interaction.\nImplementation may be trickier.","shortMessageHtmlLink":"🚧 nested sample definitions"}},{"before":"5483a024fdc5daa0a75ce98ec80c866b1d284681","after":"8d645c65158444a6cb0b3e6f9cee981aeef763da","ref":"refs/heads/victorlin/generate-subsampling-config","pushedAt":"2024-04-12T21:32:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"fixup! 🚧 Use augur subsample\n\nAdd global excludes","shortMessageHtmlLink":"fixup! 🚧 Use augur subsample"}},{"before":"fc84ca14bc3cfd6dacc23259c9c6ff6945f6f795","after":"5483a024fdc5daa0a75ce98ec80c866b1d284681","ref":"refs/heads/victorlin/generate-subsampling-config","pushedAt":"2024-04-12T00:14:44.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"Revert \"Put filters into separate config key\"\n\nThis reverts commit 1bebecfb6a2abe5f4069d762ed870f1ce4f4e661.","shortMessageHtmlLink":"Revert \"Put filters into separate config key\""}},{"before":"40d5dfe98dddcb24cce4cace1a8059414e52eb59","after":"fc84ca14bc3cfd6dacc23259c9c6ff6945f6f795","ref":"refs/heads/victorlin/generate-subsampling-config","pushedAt":"2024-04-11T00:32:17.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"Use weighted sampling and separation of filters","shortMessageHtmlLink":"Use weighted sampling and separation of filters"}},{"before":"e982fbb7e8b63bd1d60778980dce0db6c6f4874a","after":null,"ref":"refs/heads/victorlin/nextalign2","pushedAt":"2024-04-10T18:53:22.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"}},{"before":"c1ced4f72e944be1aaf89b10cbaa5dfddd2a7d7a","after":null,"ref":"refs/heads/victorlin/use-centralized-sync-rtd-redirects","pushedAt":"2024-04-09T23:29:44.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"}},{"before":"c72d46bb5366431e1a91688afa0fb5f22e86afe5","after":"c3dfb153f441b560f4223cab3420aa3a7d968740","ref":"refs/heads/master","pushedAt":"2024-04-09T23:29:44.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"Merge pull request #1034: dev: Use centralized sync-rtd-redirects workflow","shortMessageHtmlLink":"Merge pull request #1034: dev: Use centralized sync-rtd-redirects wor…"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEW0oEkwA","startCursor":null,"endCursor":null}},"title":"Activity Β· nextstrain/ncov"}