{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":709487487,"defaultBranch":"main","name":"funannotate2","ownerLogin":"nextgenusfs","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-10-24T20:00:49.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/6164308?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1698177651.0621362","currentOid":""},"activityList":{"items":[{"before":"0d0e938f24012632eb912dc8465ee5b271c3ccaa","after":"1c27555925983d81adf1cabe16b83281aa581684","ref":"refs/heads/main","pushedAt":"2024-05-25T03:54:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"tax lookup skip verify warning","shortMessageHtmlLink":"tax lookup skip verify warning"}},{"before":"bb7a833766d846b9e4ec54910160687c0c07f1e1","after":"0d0e938f24012632eb912dc8465ee5b271c3ccaa","ref":"refs/heads/main","pushedAt":"2024-05-25T03:40:43.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"update version","shortMessageHtmlLink":"update version"}},{"before":"241a2c09d9f05c5c6ff5fc5e24ade75f4b2ca5b6","after":"bb7a833766d846b9e4ec54910160687c0c07f1e1","ref":"refs/heads/main","pushedAt":"2024-05-25T03:28:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"try to fix cert/issue with jgi taxonomy lookup 2","shortMessageHtmlLink":"try to fix cert/issue with jgi taxonomy lookup 2"}},{"before":"ddc8cf8c81a096f28e3be9016260cdc51945e526","after":"241a2c09d9f05c5c6ff5fc5e24ade75f4b2ca5b6","ref":"refs/heads/main","pushedAt":"2024-05-25T03:23:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"try to fix cert/issue with jgi taxonomy lookup","shortMessageHtmlLink":"try to fix cert/issue with jgi taxonomy lookup"}},{"before":"5f91cc787e8228a82dd131ea985bb1a8281bd2bc","after":"ddc8cf8c81a096f28e3be9016260cdc51945e526","ref":"refs/heads/main","pushedAt":"2024-03-08T03:53:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"trigger interlap black reformat 2","shortMessageHtmlLink":"trigger interlap black reformat 2"}},{"before":"820e11d73878f3b0c048beb7e882ff332c7d0a9d","after":"5f91cc787e8228a82dd131ea985bb1a8281bd2bc","ref":"refs/heads/main","pushedAt":"2024-03-08T03:49:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"trigger interlap black reformat","shortMessageHtmlLink":"trigger interlap black reformat"}},{"before":"68f64cfeac1a6d0096072acb524578098629037a","after":"820e11d73878f3b0c048beb7e882ff332c7d0a9d","ref":"refs/heads/main","pushedAt":"2024-03-08T03:47:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"few linting cleanups and fasta2chunks function","shortMessageHtmlLink":"few linting cleanups and fasta2chunks function"}},{"before":"cbbf07e991d0ece3f2ec5c80e836f902ecae4cdd","after":"68f64cfeac1a6d0096072acb524578098629037a","ref":"refs/heads/main","pushedAt":"2024-02-22T23:33:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"updates for improved consensus calling","shortMessageHtmlLink":"updates for improved consensus calling"}},{"before":"bbd73ebbca79a33dfbdb3f62a7ceaf351040b54b","after":"cbbf07e991d0ece3f2ec5c80e836f902ecae4cdd","ref":"refs/heads/main","pushedAt":"2023-11-17T18:30:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"bump version","shortMessageHtmlLink":"bump version"}},{"before":"9904cb5a00904da8748d0e832f64ccf3c360b35c","after":"bbd73ebbca79a33dfbdb3f62a7ceaf351040b54b","ref":"refs/heads/main","pushedAt":"2023-11-17T18:28:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"set consensus default to gfftk","shortMessageHtmlLink":"set consensus default to gfftk"}},{"before":"472bf094fa582f07d8819f920c572582749bc330","after":"9904cb5a00904da8748d0e832f64ccf3c360b35c","ref":"refs/heads/main","pushedAt":"2023-11-17T16:31:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"fix for evm typo","shortMessageHtmlLink":"fix for evm typo"}},{"before":"c51b808bb2cd73af507a647b8edd7dc9d66d14da","after":"472bf094fa582f07d8819f920c572582749bc330","ref":"refs/heads/main","pushedAt":"2023-11-17T05:57:45.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"fix biowarning issue; add simplify contig mapping to predict","shortMessageHtmlLink":"fix biowarning issue; add simplify contig mapping to predict"}},{"before":"6b2b088436f7205bd83d71455d7acb8444303003","after":"c51b808bb2cd73af507a647b8edd7dc9d66d14da","ref":"refs/heads/main","pushedAt":"2023-11-17T05:32:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hyphaltip","name":"Jason Stajich","path":"/hyphaltip","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48827?s=80&v=4"},"commit":{"message":"Update README.md\n\nadd table2asn as dependency","shortMessageHtmlLink":"Update README.md"}},{"before":"99799d1b14156f5fdf35b9b589cbe79cbec90d72","after":"6b2b088436f7205bd83d71455d7acb8444303003","ref":"refs/heads/main","pushedAt":"2023-11-17T04:56:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hyphaltip","name":"Jason Stajich","path":"/hyphaltip","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48827?s=80&v=4"},"commit":{"message":"Update README.md\n\nadd tRNAScan-SE dependency.","shortMessageHtmlLink":"Update README.md"}},{"before":"54d4062d6d8d219358c38c416d1db85e900c331b","after":"99799d1b14156f5fdf35b9b589cbe79cbec90d72","ref":"refs/heads/main","pushedAt":"2023-11-16T23:28:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"change header default; might remove completely for tain #2","shortMessageHtmlLink":"change header default; might remove completely for tain <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1997923114\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nextgenusfs/funannotate2/issues/2\" data-hovercard-type=\"issue\" data-hovercard-url=\"/nextgenusfs/funannotate2/issues/2/hovercard\" href=\"https://github.com/nextgenusfs/funannotate2/issues/2\">#2</a>"}},{"before":"5d1b78d3504298c3ff145ee85e0debe124bfaaee","after":"54d4062d6d8d219358c38c416d1db85e900c331b","ref":"refs/heads/main","pushedAt":"2023-11-16T23:24:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"automatically rename training contigs #2","shortMessageHtmlLink":"automatically rename training contigs <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1997923114\" data-permission-text=\"Title is private\" data-url=\"https://github.com/nextgenusfs/funannotate2/issues/2\" data-hovercard-type=\"issue\" data-hovercard-url=\"/nextgenusfs/funannotate2/issues/2/hovercard\" href=\"https://github.com/nextgenusfs/funannotate2/issues/2\">#2</a>"}},{"before":"7ddb1cb6893f9dd7a2f42cbc07bcd3a6fe0a812a","after":"5d1b78d3504298c3ff145ee85e0debe124bfaaee","ref":"refs/heads/main","pushedAt":"2023-11-16T21:50:57.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"Merge branch 'main' of https://github.com/nextgenusfs/funannotate2","shortMessageHtmlLink":"Merge branch 'main' of <a href=\"https://github.com/nextgenusfs/funannotate2\">https://github.com/nextgenusfs/funannotate2</a>"}},{"before":"2881396dcc4a76628c007f3fe6767ec316560d4a","after":"7ddb1cb6893f9dd7a2f42cbc07bcd3a6fe0a812a","ref":"refs/heads/main","pushedAt":"2023-11-07T00:53:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hyphaltip","name":"Jason Stajich","path":"/hyphaltip","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48827?s=80&v=4"},"commit":{"message":"add some installation details","shortMessageHtmlLink":"add some installation details"}},{"before":"c359be46f61614698d37829eb2580a6570c7ce16","after":"2881396dcc4a76628c007f3fe6767ec316560d4a","ref":"refs/heads/main","pushedAt":"2023-11-06T22:50:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"update output file naming","shortMessageHtmlLink":"update output file naming"}},{"before":"8faa3266ad270afedfc5248db0175795d4117658","after":"c359be46f61614698d37829eb2580a6570c7ce16","ref":"refs/heads/main","pushedAt":"2023-11-06T17:49:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hyphaltip","name":"Jason Stajich","path":"/hyphaltip","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48827?s=80&v=4"},"commit":{"message":"whitespace cleanup pre-pre-commit","shortMessageHtmlLink":"whitespace cleanup pre-pre-commit"}},{"before":"8d7aac1ff725b3739df096cd0a63f0225a174bc0","after":"8faa3266ad270afedfc5248db0175795d4117658","ref":"refs/heads/main","pushedAt":"2023-11-06T17:49:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hyphaltip","name":"Jason Stajich","path":"/hyphaltip","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48827?s=80&v=4"},"commit":{"message":"add config for pre-commit","shortMessageHtmlLink":"add config for pre-commit"}},{"before":"f28480a29cf9b6fb47cbe3c3712b00abab5aca2b","after":"8d7aac1ff725b3739df096cd0a63f0225a174bc0","ref":"refs/heads/main","pushedAt":"2023-11-04T23:18:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"fix evm bug","shortMessageHtmlLink":"fix evm bug"}},{"before":"c74f699dbd5890ed203becfe9a541430b7e59128","after":"f28480a29cf9b6fb47cbe3c3712b00abab5aca2b","ref":"refs/heads/main","pushedAt":"2023-11-04T22:11:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"evm use either v1 or v2","shortMessageHtmlLink":"evm use either v1 or v2"}},{"before":"1d4a4226d1f9cb24d9ef2e81f4bdbed0b41073b0","after":"c74f699dbd5890ed203becfe9a541430b7e59128","ref":"refs/heads/main","pushedAt":"2023-11-04T07:06:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"pin pyfastx>=2 to fix composition issues","shortMessageHtmlLink":"pin pyfastx&gt;=2 to fix composition issues"}},{"before":"c305a66a5587753da4029b7958e8ec40a617f081","after":"1d4a4226d1f9cb24d9ef2e81f4bdbed0b41073b0","ref":"refs/heads/main","pushedAt":"2023-11-03T04:38:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"add tRNAscan; sort/rename combined models; output gff3/tbl/gbff to results","shortMessageHtmlLink":"add tRNAscan; sort/rename combined models; output gff3/tbl/gbff to re…"}},{"before":"35af80c3f7e2d0fecb9305d013de19789f2a7f28","after":"c305a66a5587753da4029b7958e8ec40a617f081","ref":"refs/heads/main","pushedAt":"2023-10-27T17:43:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"clean up evm; print annotation stats; print abintio stats","shortMessageHtmlLink":"clean up evm; print annotation stats; print abintio stats"}},{"before":"4fe4230c71a99deed513ebe5a0af8e2957eb5257","after":"35af80c3f7e2d0fecb9305d013de19789f2a7f28","ref":"refs/heads/main","pushedAt":"2023-10-27T15:00:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"black format","shortMessageHtmlLink":"black format"}},{"before":"178af9ac0a8b79d39a01b66f950278f8b7f648c7","after":"4fe4230c71a99deed513ebe5a0af8e2957eb5257","ref":"refs/heads/main","pushedAt":"2023-10-27T14:58:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"add evm/gfftk consensus option to predict; add black formatting linter to actions","shortMessageHtmlLink":"add evm/gfftk consensus option to predict; add black formatting linte…"}},{"before":"cee26f14e3853c16671cb7b208f1f348d798297f","after":"178af9ac0a8b79d39a01b66f950278f8b7f648c7","ref":"refs/heads/main","pushedAt":"2023-10-26T19:33:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"fix interlap import in train","shortMessageHtmlLink":"fix interlap import in train"}},{"before":"ca23026119bf2b1993ece147a064f4c89dee0d96","after":"cee26f14e3853c16671cb7b208f1f348d798297f","ref":"refs/heads/main","pushedAt":"2023-10-26T19:31:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"nextgenusfs","name":"Jon Palmer","path":"/nextgenusfs","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6164308?s=80&v=4"},"commit":{"message":"add interlap","shortMessageHtmlLink":"add interlap"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEU4tkcQA","startCursor":null,"endCursor":null}},"title":"Activity · nextgenusfs/funannotate2"}