.gitignore

*~
*.asv
*.mat
*.nii
*.nii.gz
*.ps
*.gipl
*.png
*.json
*.woff
*.trk.gz
*.trk
*.zip
*.6
*.pyc
*.mat.bids
*.mat.dev
*.mat.classic
*.tmp
*.temp
.idea
__pycache__
CMakeLists.txt

/ea_prefs_*.m

gibsconnect*.mat
fibers/
release/
tmp/
lead_standalone/
connectomes/
coverage_html/

/templates/space/MNI_ICBM_2009b_NLIN_ASYM/

# dev only
ea_make_release.m

# OS generated files #
######################
.DS_Store
.DS_Store?
._*
.Spotlight-V100
.Trashes
ehthumbs.db
Thumbs.db

# Excluded
!icons/*.png
!ext_libs/SmudgeModule/Resources/Icons/*.png
!bg_gui.png
!bg_gui_lg.png
!ea_logo.png
!segjob*.mat
!ea_prefs_default.mat
!ext_libs/support/**/*
!common/ea_prefs_default.json

/slicer.py

/ext_libs/SlicerCustom*
/ext_libs/SlicerForLeadDBS*
/ext_libs/miniconda
/ext_libs/mambaforge
/ext_libs/fastsurfer/upstream

/templates/space/Waxholm_Space_Atlas_SD_Rat_Brain/