tox.ini

; Tox configuration file - http://tox.readthedocs.io/en/latest/config.html
[tox]
envlist = py{37,38,39},flake8


[testenv]
; Configuration to put in all test environments (unless overridden)
;
; Install pm4ngs, its test dependencies, and
; teamcity-messages (so it can tell TC which tests passed).

deps =
    -rrequirements/test.txt

; Coverage options are not in `addopts` because PyCharm doesn't stop on breakpoints inside tests
commands = py.test {posargs:--cov pm4ngs --cov tests --cov-report term-missing --cov-report html --cov-report xml:coverage.xml}

; usedevelop: if true, use `setup.py develop` to install pm4ngs
; inside Tox's test environment.  If false, use `setup.py install`.
;
; Set `usedevelop = True` if you want your tests to run faster.
;
; Set `usedevelop = False` if your tests rely on data files or executable
; binaries being installed correctly, or if your package is a namespace package
; (like ncbi.*) AND it uses another package in the same namespace.
usedevelop = True

; If your application needs some external configuration values in environment
; variables, uncomment these lines and list the variables here, separated by
; whitespace, wildcards work:
;passenv =
;    MY_DATABASE_URL


[testenv:flake8]
; Flake8 test environment, don't install the package or its deps, instead just
; install & run flake8.

skip_install = True
deps = flake8
commands = flake8 src/ tests/

; This should correspond to the lowest Python interpreter version supported by the package
basepython = python3.7


[pytest]
doctest_optionflags = ELLIPSIS
testpaths = tests/


[flake8]
max-line-length = 99
count = True
statistics = True
show-source = True
max-complexity = 10