ImportError after installation #1123
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Hello, I am receiving a similar issue after installing MSMBuilder 3.8.0 from |
Same thing here. Should be an easy fix just changing the import, might try to do it myself. I've heard from the old maintainers that no one is maintaining the project anymore. |
Actually, this is addressed in the code, its just not in the build. https://github.com/msmbuilder/msmbuilder/blob/master/msmbuilder/utils/param_sweep.py#L3
But I get all kinds of compiler errors... Here is the full listing of commands I run to do this in a fresh env:
And the full output with extra info in the fancy shell prompt:
|
I am able to build on my machine if I use the 3.8.0 commit tag:
But the fix happened recently: 8c901a3 My fork resets back to 3.8.0 so I can build it and then makes the necessary fixes (for me to run KCenters at least, I haven't run the tests): https://github.com/salotz/msmbuilder |
is there a issue open for the build failure? it looks like it might be a issue related to a newer version of cython. |
I don't know if I am building properly as I wasn't able to find a comprehensive guide, just wanted to share my workaround give as much info as I had so I didn't want to raise that as an issue. I just installed the packages from conda-forge as they are specified in the up to date meta.yaml file which uses an older cython 0.27.3 https://github.com/msmbuilder/msmbuilder/blob/master/devtools/conda-recipe/meta.yaml#L19 so I don't think it is that. |
@salotz: with cython==0.24, I get errors like that when running |
Works for me now too. I installed with the latest cython from conda-forge (0.29.13). Should've tried that first. Thanks @rmcgibbo. |
I am trying to compute Implied time scale but I have this error /misc/home/marzouk/anaconda3/envs/msmbuilder/lib/python3.6/site-packages/sklearn/externals/joblib/init.py:15: DeprecationWarning: sklearn.externals.joblib is deprecated in 0.21 and will be removed in 0.23. Please import this functionality directly from joblib, which can be installed with: pip install joblib. If this warning is raised when loading pickled models, you may need to re-serialize those models with scikit-learn 0.21+. Traceback (most recent call last): |
After installation on MacOS 10.14.1, with miniconda, using the command
conda install -c omnia msmbuilder
, I am getting anImportError: No module named grid_search
.Here is the full traceback from running
msmb -h
:I am using a Miniconda 3.7 installation, but also have python 3.6 and python 2.7 installed on my machine. I freshly installed miniconda to install MSMbuilder, so it is the latest version.
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