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Thank you for developing this awsome tool.
I would like to know what is the best practice for selecting a unique transcript based on vep2maf. I am in a clinical analysis scenario, focusing on dozens of genes.
I plan to create a corresponding table of genes and transcripts based on grch37 based on the MANE project.
Then let vcf2maf accept this table and filter it. I noticed that custom inst seems to be able to solve this problem.
But I am a bit confused, different versions of transcripts should produce different tables. How can I clarify my transcript version? And if there are genes outside of these dozens in my data, maby they won't be annotated?
The text was updated successfully, but these errors were encountered:
Thank you for developing this awsome tool.
I would like to know what is the best practice for selecting a unique transcript based on vep2maf. I am in a clinical analysis scenario, focusing on dozens of genes.
I plan to create a corresponding table of genes and transcripts based on grch37 based on the MANE project.
Then let vcf2maf accept this table and filter it. I noticed that custom inst seems to be able to solve this problem.
But I am a bit confused, different versions of transcripts should produce different tables. How can I clarify my transcript version? And if there are genes outside of these dozens in my data, maby they won't be annotated?
The text was updated successfully, but these errors were encountered: