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Multiprocessing sometimes fails in talon_label_reads #66

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fairliereese opened this issue Jul 9, 2020 · 0 comments
Open

Multiprocessing sometimes fails in talon_label_reads #66

fairliereese opened this issue Jul 9, 2020 · 0 comments
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The fix would be to pass the same pyfaidx genome object to each of the threads instead of initializing a new one on each different thread. Pyfaidx creates and accesses flat files on the disk that can result in clashes across threads.
@fairliereese fairliereese self-assigned this Jul 9, 2020
@fairliereese fairliereese added the bug Something isn't working label Jul 9, 2020
houlinyu added a commit to MethodsDev/iso-reconstruct-benchmark that referenced this issue Sep 23, 2023
@houlinyu
Update Talon.wdl
cf2dbd1 
switch Talon thread from user defined number to 1 -
due to problem reported: mortazavilab/TALON#66
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