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malloc(): corrupted top size #35

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jnalanko opened this issue Nov 1, 2022 · 0 comments
Open

malloc(): corrupted top size #35

jnalanko opened this issue Nov 1, 2022 · 0 comments

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@jnalanko
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jnalanko commented Nov 1, 2022

I am getting the following error message. The input is attached (.txt suffix instead of .fna so that Github lets me attach the file).

niklas@niklas-Zenbook:~/code/CONSENT$ ./CONSENT-correct --in reads.fna --out example/correctedReads.fasta --type ONT
[ti 1.11.2022 14.52.44 +0200] Overlapping the long reads (minimap2)
[ti 1.11.2022 14.52.44 +0200] Correcting the long reads
malloc(): corrupted top size
./CONSENT-correct: line 202: 14609 Aborted                 (core dumped) $LRSCf/bin/CONSENT-correction -a $tmpdir/"$alignments" -s "$minSupport" -S "$maxSupport" -l "$windowSize" -k "$merSize" -c "$commonKMers" -A "$minAnchors" -f "$solid" -m "$windowOverlap" -j "$nproc" -r "$reads" -M "$maxMSA" -p "$LRSCf" >> "$out"

reads.txt

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