bug in loading scPerturb datasets #256
Labels
bug
Something isn't working
good first issue
Good for newcomers
high-priority-post-neurips
high priority issue. but will be completed after neurips
Hi @kexinhuang12345, as you know
ReplogleWeissman2022
study has three datasets.Currently, as I understand
ReplogleWeissman2022_K562_gwps
data is not uploaded. However, I noticed a weird behavior when I tried to load it! I hadReplogleWeissman2022_k562_essential
already downloaded in apath
folder and then I tried loadingscperturb_gene_ReplogleWeissman2022_K562_gwps
and noticed it's sayingFound local copy...
!Looking at the # of perturbations, it's not true for
_gwps
dataset. It should be 9867 but it's 2058 (this is the same number as_essential
dataset)Looking more carefully, I tried an empty folder and noticed for some reason this is downloading wrong file for
_gwps
.cc @amva13
Originally posted by @abearab in #239 (comment)
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