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VDJtools input colontype definition #167

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Thuwzz opened this issue Jan 30, 2024 · 0 comments
Open

VDJtools input colontype definition #167

Thuwzz opened this issue Jan 30, 2024 · 0 comments

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@Thuwzz
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Thuwzz commented Jan 30, 2024

In Cell Ranger v4 and lower, two cells were merged into a clonotype only when the CDR3 nucleotide sequences of all productive chains in the cells were an exact match (10X genomics). How does VDJtools define a clonotype, the same as Cell Ranger or by one specific chain?
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@Thuwzz