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A bug of OverlapPair: div1 and div2 are wrong when overlap type isn't nt #161

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songofbin opened this issue May 17, 2022 · 0 comments
Open

A bug of OverlapPair: div1 and div2 are wrong when overlap type isn't nt #161

songofbin opened this issue May 17, 2022 · 0 comments

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@songofbin
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Hi, I find a bug of OverlapPair: div1 and div2 are wrong when 'overlap type' isn't 'nt'.

Here is an example:
java -jar vdjtools.jar OverlapPair -i aa sample1.txt sample2.txt aa/result
java -jar vdjtools.jar OverlapPair -i nt sample1.txt sample2.txt nt/result
java -jar vdjtools.jar OverlapPair -i strict sample1.txt sample2.txt strict/result

$ cat nt/result.paired.nt.summary.txt | cut -f1-6
1_sample_id 2_sample_id div1 div2 div12 div21
sample1 sample2 62917 76574 4236 4236

$ cat aa/result.paired.aa.summary.txt | cut -f1-6
1_sample_id 2_sample_id div1 div2 div12 div21
sample1 sample2 62917 76574 5392 5392

$ cat strict/result.paired.strict.summary.txt | cut -f1-6
1_sample_id 2_sample_id div1 div2 div12 div21
sample1 sample2 62917 76574 4096 4096
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