You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
hi,
We could like to convert the immunoseq file into vdjtool file.
the test file( immunoseq_1.txt) can work.But it has an error when it converting the work flie.
[Fri Apr 15 13:28:10 CST 2022 Convert] Reading sample(s)
[Fri Apr 15 13:28:10 CST 2022 Convert] 1 sample(s) loaded
[Fri Apr 15 13:28:10 CST 2022 SampleStreamConnection] Loading sample 1003_TCRB
[ERROR] java.lang.RuntimeException: Unable to parse clonotype string CTGGAGTCGCCCAGCCCCAACCAGACCTCTCTGTACTTCTGTGCCAGCAGTTTTATTCAGGGGAACACTGAAGCTTTCTTTGGACAA ATGGGCCCCCAGCTCCTTGGCTATGTGGTCCTTTGCCTTCTAGGAGCAGGCCCCCTGGAAGCCCAAGTGACCCAGAACCCAAGATACCTCATCACAGTGACTGGAAAGAAGTTAACAGTGACTTGTTCTCAGAATATGAACCATGAGTATATGTCCTGGTATCGACAAGACCCAGGGCTGGGCTTAAGGCAGATCTACTATTCAATGAATGTTGAGGTGACTGATAAGGGAGATGTTCCTGAAGGGTACAAAGTCTCTCGAAAAGAGAAGAGGAATTTCCCCCTGATCCTGGAGTCGCCCAGCCCCAACCAGACCTCTCTGTACTTCTGTGCCAGCAGTTTTATTCAGGGGAACACTGAAGCTTTCTTTGGACAAGGCACCAGACTCACAGTTGTAG CASSFIQGNTEAFF+TCRBV27-01+TCRBJ01-01 CASSFIQGNTEAFF 259 In VDJ 9.976311076016408E-4 135 15 201 18 327 42 39 53 57 -1 62 3 4 3 4 no data 1 01 TCRBJ01 01 01 TCRBV27 01 01 no data TCRBD01 no data TCRBD01-01 no data TCRBD01-0101 01 no data TCRBJ01 no data TCRBJ01-01 no data TCRBJ01-0101 01 no data TCRBV27 no data TCRBV27-01 no data TCRBV27-01*01 for ImmunoSeqV2 input type: Some mandatory columns are absent in the input file., see _vdjtools_error.log for details
The text was updated successfully, but these errors were encountered:
hi,
We could like to convert the immunoseq file into vdjtool file.
the test file( immunoseq_1.txt) can work.But it has an error when it converting the work flie.
[Fri Apr 15 13:28:10 CST 2022 Convert] Reading sample(s)
[Fri Apr 15 13:28:10 CST 2022 Convert] 1 sample(s) loaded
[Fri Apr 15 13:28:10 CST 2022 SampleStreamConnection] Loading sample 1003_TCRB
[ERROR] java.lang.RuntimeException: Unable to parse clonotype string CTGGAGTCGCCCAGCCCCAACCAGACCTCTCTGTACTTCTGTGCCAGCAGTTTTATTCAGGGGAACACTGAAGCTTTCTTTGGACAA ATGGGCCCCCAGCTCCTTGGCTATGTGGTCCTTTGCCTTCTAGGAGCAGGCCCCCTGGAAGCCCAAGTGACCCAGAACCCAAGATACCTCATCACAGTGACTGGAAAGAAGTTAACAGTGACTTGTTCTCAGAATATGAACCATGAGTATATGTCCTGGTATCGACAAGACCCAGGGCTGGGCTTAAGGCAGATCTACTATTCAATGAATGTTGAGGTGACTGATAAGGGAGATGTTCCTGAAGGGTACAAAGTCTCTCGAAAAGAGAAGAGGAATTTCCCCCTGATCCTGGAGTCGCCCAGCCCCAACCAGACCTCTCTGTACTTCTGTGCCAGCAGTTTTATTCAGGGGAACACTGAAGCTTTCTTTGGACAAGGCACCAGACTCACAGTTGTAG CASSFIQGNTEAFF+TCRBV27-01+TCRBJ01-01 CASSFIQGNTEAFF 259 In VDJ 9.976311076016408E-4 135 15 201 18 327 42 39 53 57 -1 62 3 4 3 4 no data 1 01 TCRBJ01 01 01 TCRBV27 01 01 no data TCRBD01 no data TCRBD01-01 no data TCRBD01-0101 01 no data TCRBJ01 no data TCRBJ01-01 no data TCRBJ01-0101 01 no data TCRBV27 no data TCRBV27-01 no data TCRBV27-01*01 for ImmunoSeqV2 input type: Some mandatory columns are absent in the input file., see _vdjtools_error.log for details
The text was updated successfully, but these errors were encountered: