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Joinsamples Frequency Calculation #149

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pbpayal opened this issue May 18, 2021 · 0 comments

pbpayal commented May 18, 2021 •

edited

Hello,

I have recently started using VDJTools. I used JoinSample to create joint clonotype abundance table. I am trying to understand the following:

How the frequency is being calculated ?
What kind of normalization and scaling is being done to obtain frequency?
What does it mean when freq =1 in the output?
What's the difference between "freq- Normalized clonotype frequency" and "sample name- Frequency of a joint clonotype at corresponding sample"
For post processing analysis, should I consider "sample name" frequency or "freq"?

Thanks in advance,
Payal

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