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Reduce peak memory used by thread #11

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noporpoise opened this issue Aug 10, 2015 · 0 comments
Open

Reduce peak memory used by thread #11

noporpoise opened this issue Aug 10, 2015 · 0 comments
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enhancement

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@noporpoise
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Consider writing links to disk to reduce peak memory.

Writing links to ~256 files, which can then be sorting and merged.
Temporary file will look like:

<kmer><junctions><tab><count>

Sorting can be done with unix sort command.
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@noporpoise