From 86b4ffe64521e1fe3ac437ea007f668e5d3171af Mon Sep 17 00:00:00 2001
From: Isaac Turner <turner.isaac@gmail.com>
Date: Sun, 20 Mar 2016 21:12:33 +0000
Subject: [PATCH] Fix usage of htslib vcf_parse(): don't end lines with \n

---
 libs/htslib              | 2 +-
 src/basic/aligned_call.c | 2 --
 2 files changed, 1 insertion(+), 3 deletions(-)

diff --git a/libs/htslib b/libs/htslib
index cad00ea0..fc93dfc1 160000
--- a/libs/htslib
+++ b/libs/htslib
@@ -1 +1 @@
-Subproject commit cad00ea01b5c3e22fa5804c28ff355a39bc84ea2
+Subproject commit fc93dfc1f9e0e701bccba69838bcbb21ef1d1328
diff --git a/src/basic/aligned_call.c b/src/basic/aligned_call.c
index 2b2f49db..44fe2290 100644
--- a/src/basic/aligned_call.c
+++ b/src/basic/aligned_call.c
@@ -134,8 +134,6 @@ static void print_vcf_entry(size_t vcf_pos, int8_t prev_base, int8_t next_base,
     strbuf_append_char(sbuf, gts[i] ? '1' : '.');
   }
 
-  strbuf_append_char(sbuf, '\n');
-
   // fprintf(stderr, " prev_base:%i next_base:%i info:%s\n", prev_base, next_base, call->info.b);
   // fprintf(stderr, "%s [%zu vs %zu]\n", sbuf->b, sbuf->end, strlen(sbuf->b));