You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi I have below coding for chord diagram and 2 different type of data (i.e., positive and negative ones). I used the dash pointed line for negative ones (just line around of each arches) but I want to know that how I can define different pattern for inside of each arch (link) instead of dash pointed line around them. Thanks in advance.
library(statnet)
library(circlize)
library(readxl)
data1 <- read_excel("C: Goal Negative.xlsx Goal posetive.xlsx
\SDGs\My File GM\Final Nvivo & Excel\R program\Goal negative.xlsx", col_names = FALSE)
my.data1 <- as.matrix(x =data1, nrow = 5, ncol = 5)
rownames(my.data1) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
colnames(my.data1) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
data2 <- read_excel("C:\Users\rbandari\OneDrive - Deakin University\SDGs\My File GM\Final Nvivo & Excel\R program\Goal posetive.xlsx", col_names = FALSE)
my.data2 <- as.matrix(x =data2, nrow = 5, ncol = 5)
rownames(my.data2) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
colnames(my.data2) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
mat=rbind(my.data1,my.data2)
rownames(mat) <- c("SDG2","SDG6","SDG8","SDG13","SDG15","SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
colnames(mat) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
grid.col[c("SDG2","SDG6","SDG8","SDG13","SDG15")] = c(rgb(red = 221, green = 166, blue = 58, max=255),rgb(red = 38, green = 189, blue = 226, max=255), rgb(red = 162, green = 25, blue = 66, max=255), rgb(red = 63, green = 126, blue = 68, max=255), rgb(red = 86, green = 192, blue = 43, max=255))
Hi I have below coding for chord diagram and 2 different type of data (i.e., positive and negative ones). I used the dash pointed line for negative ones (just line around of each arches) but I want to know that how I can define different pattern for inside of each arch (link) instead of dash pointed line around them. Thanks in advance.
library(statnet)
library(circlize)
library(readxl)
data1 <- read_excel("C:
Goal Negative.xlsx
Goal posetive.xlsx
\SDGs\My File GM\Final Nvivo & Excel\R program\Goal negative.xlsx", col_names = FALSE)
my.data1 <- as.matrix(x =data1, nrow = 5, ncol = 5)
rownames(my.data1) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
colnames(my.data1) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
data2 <- read_excel("C:\Users\rbandari\OneDrive - Deakin University\SDGs\My File GM\Final Nvivo & Excel\R program\Goal posetive.xlsx", col_names = FALSE)
my.data2 <- as.matrix(x =data2, nrow = 5, ncol = 5)
rownames(my.data2) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
colnames(my.data2) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
mat=rbind(my.data1,my.data2)
rownames(mat) <- c("SDG2","SDG6","SDG8","SDG13","SDG15","SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
colnames(mat) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
grid.col[c("SDG2","SDG6","SDG8","SDG13","SDG15")] = c(rgb(red = 221, green = 166, blue = 58, max=255),rgb(red = 38, green = 189, blue = 226, max=255), rgb(red = 162, green = 25, blue = 66, max=255), rgb(red = 63, green = 126, blue = 68, max=255), rgb(red = 86, green = 192, blue = 43, max=255))
lwd_mat = matrix(1, nrow = nrow(mat), ncol = ncol(mat))
rownames(lwd_mat) <- c("SDG2","SDG6","SDG8","SDG13","SDG15","SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
colnames(lwd_mat) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
lwd_mat[mat < 0] = 2
border_mat = matrix(NA, nrow = nrow(mat), ncol = ncol(mat))
rownames(border_mat) <- c("SDG2","SDG6","SDG8","SDG13","SDG15","SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
colnames(border_mat) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
border_mat[mat < 0] = "red"
lty_mat =matrix(1, nrow = nrow(mat), ncol = ncol(mat))
rownames(lty_mat) <- c("SDG2","SDG6","SDG8","SDG13","SDG15","SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
colnames(lty_mat) <- c("SDG2","SDG6","SDG8","SDG13","SDG15")#named by yourself
lty_mat[mat < 0] = 3
chordDiagram(mat, grid.col = grid.col, link.lwd = lwd_mat, link.lty =lty_mat, link.border = border_mat,
transparency = 0.25, annotationTrack = "grid", preAllocateTracks = list(track.height = max(strwidth(unlist(dimnames(my.data))))))
circos.track(track.index = 1, panel.fun = function(x, y) {
circos.text(CELL_META$xcenter, CELL_META$ylim[1], CELL_META$sector.index,
facing = "outside", niceFacing = TRUE, adj = c(0.4, 1))
}, bg.border = NA) # here set bg.border to NA is important
circos.clear()
The text was updated successfully, but these errors were encountered: