Install some optional dependencies in CI #3786
Draft
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
DanielYang59
force-pushed
the
install-opt-dep
branch
from
fa94c5a
to
45e0dc7
Compare
…to install-opt-dep
|
do we want to merge this as partially complete and leave some of the todos for later? |
|
Thanks for asking. I was facing some resistance while trying to install them (maybe that's the reason they're not installed in CI). And what make things worse is that I never use any of these. I'm currently working on the Also some help would be appreciated:
UPDATE: |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Summary
bader_caller(settingPATHto empty is easier than changing thepatchlocation, and serves the same result wherebadercannot be found inPATH)Installed
boltztrap2: (partial) installable only on Ubuntu and withpip(uvwouldn't work and suggest nonumpyfound when there is)Unsuccessful
Remaining
graphviz: 186ead5, install successful, but still get SKIPPED [1] tests/analysis/test_graphs.py:341: graphviz executables not present, maybe need Installation:fatal error: 'graphviz/cgraph.h' file not found pygraphviz/pygraphviz#11 andneato+fdpcritic2: https://aoterodelaroza.github.io/critic2/installation/OBAlign: should come withopenbabel?vampire: https://vampire.york.ac.uk/download/x_trans: http://www.icams.de/content/research/software-development/boltztrap/ (Page not found)zeo/pyzeo: http://www.zeoplusplus.org/download.html (last update 2017)