Fix inconsistencies in filtering pipline

[florian-huber]

During some testing I came across a few smaller things/inconsistencies/bugs in the filtering pipeline.

1. repair_not_matching_annotation

• sometimes gave the following warning: WARNING:matchms:repair_not_matching_annotation:Please first run repair_inchi_from_smiles, repair_smiles_from_inchi and repair_inchikey. The spectrum had partly valid annotations, this shows that these repair functions were not yet run.
• This message came even though all default filters were run before.
• And the function names are wrong, it should probably be derive_smiles_form_inchi etc. ?

2. repair_precursor_is_parent_mass and several others use get_monoisotopic_neutral_mass(smiles)

• Should we add the option to work from the inchi as well? (because it failed for several cases, nothing too bad, but maybe something for future PRs)