Running RagTag on bacterial short-read assemblies

[ne1al]

Hi!
I have short read assemblies from bacterial genomes that I am trying to improve using RagTag.
My question is about how I can use RagTag for bacterial genomes considering chromosomal and extrachromosomal genomes (plasmid)? Do you have a tested use case for that? Also plasmid vary much in content.
Kindly advise.