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RagTag name coming up #149

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rmormando opened this issue Jan 17, 2023 · 0 comments
Open

RagTag name coming up #149

rmormando opened this issue Jan 17, 2023 · 0 comments

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@rmormando
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Hello! For some reason everytime I run RagTag with the following command it adds "_RagTag" to the resulting headers of the FASTA file and I would like to get rid of that.

ragtag.py scaffold reference.fa assembly.fasta  -o ragtag_out -w --aligner ../minimap2/minimap2

As a remedy, I have just been going in and Find & Replacing every instance of "_RagTag" with a blank space. I was going to work on writing a quick script to get rid of it but I wanted to first see if it was a problem with my command instead. Thanks!

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