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I have encountered the following errors when using this software. Can you help me solve them. #83

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zhangkaihui1 opened this issue Sep 6, 2023 · 0 comments

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@zhangkaihui1
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Hello, I have encountered the following errors when using this software. Can you help me solve them.

/data/zhangkh/.conda/envs/ragoo/bin/ragoo.py:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import('pkg_resources').run_script('RaGOO==1.1', 'ragoo.py')
Wed Sep 6 21:12:03 2023 --- Reading alignments
Wed Sep 6 21:12:03 2023 --- Assigning contigs
Wed Sep 6 21:12:03 2023 --- Ordering and orienting contigs
Wed Sep 6 21:12:03 2023 --- Creating pseudomolecules
Traceback (most recent call last):
File "/data/zhangkh/.conda/envs/ragoo/bin/ragoo.py", line 4, in
import('pkg_resources').run_script('RaGOO==1.1', 'ragoo.py')
File "/data/zhangkh/.conda/envs/ragoo/lib/python3.7/site-packages/pkg_resources/init.py", line 722, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/data/zhangkh/.conda/envs/ragoo/lib/python3.7/site-packages/pkg_resources/init.py", line 1572, in run_script
exec(script_code, namespace, namespace)
File "/data/zhangkh/.conda/envs/ragoo/lib/python3.7/site-packages/RaGOO-1.1-py3.7.egg/EGG-INFO/scripts/ragoo.py", line 742, in
File "/data/zhangkh/.conda/envs/ragoo/lib/python3.7/site-packages/RaGOO-1.1-py3.7.egg/EGG-INFO/scripts/ragoo.py", line 339, in create_pseudomolecules
ValueError: '>CTG006320' is not in list

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