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Segmentation parameters for WSI with partially black background #242

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Fel1xJulian opened this issue Apr 22, 2024 · 0 comments
Closed

Segmentation parameters for WSI with partially black background #242

Fel1xJulian opened this issue Apr 22, 2024 · 0 comments

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@Fel1xJulian
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Hi,

is there a set of ready-to-use segmentation parameters available that successfully segments WSIs with a partially black background? Right now the mask is right at the border between black and light pixels.
The black background is a result of the necessary conversion from czi to tiff.

Screenshot 2024-04-22 at 12 04 36
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