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tanglegram #2
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@zackgalbreath, does Arbor have your VTK-based tanglegram in it now for reference and testing? Just asking, don't drop what you are doing. |
On Wed, Sep 17, 2014 at 11:51 AM, Curtis Lisle notifications@github.com
Yes it does, you should see it as an entry under the visualization tab. |
OK, we have this in arbor web but not R, we can add it later. |
is tanglegram implemented in R yet? If not, how should the CSV be formatted in VTK-based version on the visualization tab? thanks!! |
Hi Chodon! I have put a call into my Kitware colleagues. I think the VTK tangle gram our program developed is not currently online, but I’ll check. Is your application heliconia vs. hummingbirds? On Jul 5, 2015, at 11:00 AM, chodon sass notifications@github.com wrote:
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Thanks Curt! This isn't for Heliconia yet, but for a colleague. I'll pass this info along and let me know any updates! Thanks again, C |
The VTK-based tanglegram in Arbor isn’t currently functional, but is planning to return to operation over the next few months. The pointer I sent matches up two trees with matching names in the taxa, the script would need to be extended a bit to have a look up table matching two different names at the edges. On Jul 6, 2015, at 12:17 PM, chodon sass notifications@github.com wrote:
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This is implemented in R now: http://blog.phytools.org/2015/07/more-on-new-method-for-co-phylogenetic.html. We can easily port this into Arbor. |
I noticed something similar to this the other day. Agreed. On Jul 13, 2015, at 11:26 PM, Luke Harmon notifications@github.com wrote:
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Implement tanglegram plot in both R and Arbor.
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