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README
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README
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NOTES REGARDING SOFTWARE
NAME RandAlign
VERSION 1.0
COPYRIGHT Copyright © 2019-2022 Lars Sommer Jermiin. All rights reserved.
WARNING The copyright holder takes no legal responsibility for the correctness of
results obtained using this program.
AUTHOR Lars Sommer Jermiin
ADDRESS Australian National University
University College Dublin
CONTACT lars.jermiin@anu.edu.au
lars.jermiin@ucd.ie
DATE 13 June 2022
PURPOSE RandAlign reads a multiple sequence alignment, shuffles the content across:
1. sites within each sequence [retains entropy of each sequence];
2. sequences within each site [retains entropy of each site];
3. sites as well as sequences.
All sites or variant sites are considered.
The resulting alignments are printed to two files.
FORMAT Sequences must be stored in the FASTA format.
DATA TYPES Nucleotides, di-nucleotides, codons, 10-state genotypes, 14-state genotypes
and amino acids.
COMPILE g++ randalign.cpp -o randalign -O3 -Wall
HELP Simply type randalign in the command line
STATUS Software complete
NOTE Contact author for updates, etc