Skip to content

lsjermiin/Homo.v2.0

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

16 Commits
 
 
 
 
 
 
 
 

Repository files navigation

NOTES REGARDING SOFTWARE

NAME        Homo

VERSION     2.0

COPYRIGHT   Copyright © 2019 Lars Sommer Jermiin. All rights reserved.

WARNING     The copyright holder takes no legal responsibility for the correctness of 
            results obtained using this program.

AUTHOR      Lars Sommer Jermiin

ADDRESS     Australian National University
            University College Dublin            

CONTACT     lars.jermiin@anu.edu.au
            lars.jermiin@ucd.ie

DATE        4 November 2019

PURPOSE     Homo conducts the matched-pairs test of symmetry for pairs of sequences of
            nucleotides, di-nucleotides, codons, genotypes and amino acids.
            
            Homo also computes three types of compositional distances between these pairs
            of sequences (including a compositional distance and the Euclidean distance)
 
FORMAT      Sequences must be stored in the FASTA format.
 
DATA TYPES  Sequences can be read as strings of singles, pairs or triplets of nucleotides, 
            as strings of 10- or 14-state genotypes, or as strings of amino acids.

COMPILE     g++ homo_2.0.cpp -o homo -O3 -Wall -lm

HELP        Simply type homo in the command line

STATUS      Software complete

NOTE        Contact author for updates, etc

CITATION    Jermiin L.S., Lovell D.R., Misof B., Robinson J. 2020.
            Software for detecting heterogeneous evolutionary processes across aligned 
            sequence data. (in review). https://www.biorxiv.org/content/10.1101/828996v1

About

Homo v2.0: A program for analysing compositional heterogeneity across aligned sequence data

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published