Homo v2.0: A program for analysing compositional heterogeneity across aligned sequence data
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NOTES REGARDING SOFTWARE NAME Homo VERSION 2.0 COPYRIGHT Copyright © 2019 Lars Sommer Jermiin. All rights reserved. WARNING The copyright holder takes no legal responsibility for the correctness of results obtained using this program. AUTHOR Lars Sommer Jermiin ADDRESS Australian National University University College Dublin CONTACT lars.jermiin@anu.edu.au lars.jermiin@ucd.ie DATE 4 November 2019 PURPOSE Homo conducts the matched-pairs test of symmetry for pairs of sequences of nucleotides, di-nucleotides, codons, genotypes and amino acids. Homo also computes three types of compositional distances between these pairs of sequences (including a compositional distance and the Euclidean distance) FORMAT Sequences must be stored in the FASTA format. DATA TYPES Sequences can be read as strings of singles, pairs or triplets of nucleotides, as strings of 10- or 14-state genotypes, or as strings of amino acids. COMPILE g++ homo_2.0.cpp -o homo -O3 -Wall -lm HELP Simply type homo in the command line STATUS Software complete NOTE Contact author for updates, etc CITATION Jermiin L.S., Lovell D.R., Misof B., Robinson J. 2020. Software for detecting heterogeneous evolutionary processes across aligned sequence data. (in review). https://www.biorxiv.org/content/10.1101/828996v1
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