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caffe_unet not found #88

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Agggy opened this issue Jun 9, 2022 · 1 comment
Open

caffe_unet not found #88

Agggy opened this issue Jun 9, 2022 · 1 comment

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@Agggy
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Agggy commented Jun 9, 2022

I am trying to run the u-net plugin on Fiji and have connected trough remote host from AWS.
I have the package downloaded as instructed by https://lmb.informatik.uni-freiburg.de/resources/opensource/unet/ on the remote host and this is where my caffe_unet file is: /home/ubuntu/caffe_unet_package_16.04_gpu_no_cuDNN/bin
But if I specify this in the promt that Fiji gives me when it can't find u-net, it does not work. What should I do?

@aj94260
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aj94260 commented Jul 3, 2023

Had same issue, did you do try this:
"If in either case no usage message is shown, make sure the $PATH and $LD_LIBRARY_PATH environment variables are setup correctly and that your profile is loaded both for interactive and non-interactive shells. For Ubuntu this may require to create a file ~/.profile that contains the line "source ~/.bashrc". If .bashrc contains an expression such as

case $- in
i);;
*) return;;
esac

or

[ -z "$PS1" ] && return

all instructions after that line will be ignored, thus the specification of the environment variables must be placed before this expression."

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