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Segmentation does not have good separation between multiple instances of cells #86

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MBronars opened this issue Mar 31, 2022 · 0 comments

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@MBronars
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I have trained U-Net to detect instances of stem cells in bright-field images. Current performance is fairly good, with a final IoU of around ~.7. However, in scenarios where the cells are touching, I am not able to get the network to detect this as two seperate cells. Do you have any suggestions about how I can fix this? I went back and redid my annotations to ensure that I left boundary between any cells that were touching. I also looked into creating a custom model and changing some of the parameters there, but I didn't see much improved results. Thanks for the help, and here is a picture of that I am talking about
Screen Shot 2022-03-31 at 3 08 09 PM
(Recognizes the right cells as two separate cells, but not the top cells)

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