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seqtk comp count CpG #202

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linpei26 opened this issue Jul 26, 2023 · 0 comments
Open

seqtk comp count CpG #202

linpei26 opened this issue Jul 26, 2023 · 0 comments

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@linpei26
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linpei26 commented Jul 26, 2023

Hi Dr. Li!

I wish to know if it would be helpful to count both CG and GC in a fastq when running the seqtk comp cmd?
Now I think only CG will be counted for the field "#CpG" in the output of seqtk comp.
(how about running seqtk seq -r first, then piped to seqtk comp?)
Am I right?

Thanks!

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