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To track the minigraph behaviour, I design a simple graph which contains some INS/DEL and INV.
forxin`seq 1 500000`;doecho$(( ( RANDOM %4 ) +1));done| sed 's/1/A/g'| sed 's/2/T/g'| sed 's/3/C/g'| sed 's/4/G/g'| tr '\n'''| sed 's/ //g'> seg1.fa
forxin`seq 1 350000`;doecho$(( ( RANDOM %4 ) +1));done| sed 's/1/A/g'| sed 's/2/T/g'| sed 's/3/C/g'| sed 's/4/G/g'| tr '\n'''| sed 's/ //g'> seg2.fa
forxin`seq 1 410000`;doecho$(( ( RANDOM %4 ) +1));done| sed 's/1/A/g'| sed 's/2/T/g'| sed 's/3/C/g'| sed 's/4/G/g'| tr '\n'''| sed 's/ //g'> seg3.fa
forxin`seq 1 320000`;doecho$(( ( RANDOM %4 ) +1));done| sed 's/1/A/g'| sed 's/2/T/g'| sed 's/3/C/g'| sed 's/4/G/g'| tr '\n'''| sed 's/ //g'> seg4.fa
forxin`seq 1 460000`;doecho$(( ( RANDOM %4 ) +1));done| sed 's/1/A/g'| sed 's/2/T/g'| sed 's/3/C/g'| sed 's/4/G/g'| tr '\n'''| sed 's/ //g'> seg5.fa
forxin`seq 1 500000`;doecho$(( ( RANDOM %4 ) +1));done| sed 's/1/A/g'| sed 's/2/T/g'| sed 's/3/C/g'| sed 's/4/G/g'| tr '\n'''| sed 's/ //g'> seg6.fa
forxin`seq 1 450000`;doecho$(( ( RANDOM %4 ) +1));done| sed 's/1/A/g'| sed 's/2/T/g'| sed 's/3/C/g'| sed 's/4/G/g'| tr '\n'''| sed 's/ //g'> seg7.fa
forxin`seq 1 380000`;doecho$(( ( RANDOM %4 ) +1));done| sed 's/1/A/g'| sed 's/2/T/g'| sed 's/3/C/g'| sed 's/4/G/g'| tr '\n'''| sed 's/ //g'> seg8.fa
forxin`seq 1 520000`;doecho$(( ( RANDOM %4 ) +1));done| sed 's/1/A/g'| sed 's/2/T/g'| sed 's/3/C/g'| sed 's/4/G/g'| tr '\n'''| sed 's/ //g'> seg9.fa
echo">seq1"> seq1.fa; cat seg1.fa seg2.fa seg3.fa seg4.fa seg5.fa seg6.fa >> seq1.fa
echo">seq2"> seq2.fa; cat seg1.fa seg7.fa seg8.fa seg2.fa seg4.fa seg6.fa >> seq2.fa
echo">seq3"> seq3.fa; cat seg1.fa seg9.fa seg3.fa seg5.fa seg4.fa seg6.fa >> seq3.fa
But when I run the command, only one sequence generates, this makes me confused.
I install the software through conda, and I used two version (0.19-r551 and 0.15-r426)
To track the
minigraph
behaviour, I design a simple graph which contains some INS/DEL and INV.But when I run the command, only one sequence generates, this makes me confused.
I install the software through
conda
, and I used two version (0.19-r551
and0.15-r426
)The text was updated successfully, but these errors were encountered: