{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":169757964,"defaultBranch":"master","name":"minigraph","ownerLogin":"lh3","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-02-08T15:43:54.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/480346?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1713673727.0","currentOid":""},"activityList":{"items":[{"before":"337976a0d47d4181983c6b346c7008c9d8cdeda4","after":"e3ab790210a831e940692cf266f1425ff2b4915f","ref":"refs/heads/master","pushedAt":"2024-05-22T00:59:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"Moved to a new repo, lh3/minisv","shortMessageHtmlLink":"Moved to a new repo, lh3/minisv"}},{"before":"ee69ad257ee957c128705e6939455192a79eae87","after":"337976a0d47d4181983c6b346c7008c9d8cdeda4","ref":"refs/heads/master","pushedAt":"2024-05-18T03:09:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"sync with the latest gafcall","shortMessageHtmlLink":"sync with the latest gafcall"}},{"before":"8b478092ff9aa7d4d0af029256173d02ce60c77b","after":"ee69ad257ee957c128705e6939455192a79eae87","ref":"refs/heads/master","pushedAt":"2024-05-08T15:17:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"sync with gafcall","shortMessageHtmlLink":"sync with gafcall"}},{"before":"7e3e65c5e55a10e2968f32cef5c04eee9330521b","after":"8b478092ff9aa7d4d0af029256173d02ce60c77b","ref":"refs/heads/master","pushedAt":"2024-05-03T13:55:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"synx with gafcall.js r119","shortMessageHtmlLink":"synx with gafcall.js r119"}},{"before":"4e1a9cd4639687bf0a6de12f4611ea45936283ea","after":"7e3e65c5e55a10e2968f32cef5c04eee9330521b","ref":"refs/heads/master","pushedAt":"2024-04-21T04:28:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"Release minigraph-0.21 (r606)","shortMessageHtmlLink":"Release minigraph-0.21 (r606)"}},{"before":"efaadde4746e10c87bbd43557df4e02ba9412123","after":"4e1a9cd4639687bf0a6de12f4611ea45936283ea","ref":"refs/heads/master","pushedAt":"2024-04-21T04:17:51.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"r605: fixed wrong sample parsing\n\nResolves #112","shortMessageHtmlLink":"r605: fixed wrong sample parsing"}},{"before":"d12395265e967d4741b60c01cf5ce265547a9d58","after":"efaadde4746e10c87bbd43557df4e02ba9412123","ref":"refs/heads/master","pushedAt":"2024-04-17T14:03:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"sync gafcall.js","shortMessageHtmlLink":"sync gafcall.js"}},{"before":"d4a2af3179b0eadd84b43ff0ad1d5919e5b6b671","after":"d12395265e967d4741b60c01cf5ce265547a9d58","ref":"refs/heads/master","pushedAt":"2024-04-17T13:34:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"moved getsv/mergesv to a new script gafcall.js","shortMessageHtmlLink":"moved getsv/mergesv to a new script gafcall.js"}},{"before":"023a93c40ee674ac7b6cc99ed4f8f00e94151f55","after":"d4a2af3179b0eadd84b43ff0ad1d5919e5b6b671","ref":"refs/heads/master","pushedAt":"2024-04-12T03:53:08.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"fixed a typo","shortMessageHtmlLink":"fixed a typo"}},{"before":"ec5fd5d071a663d2e2eaea9ba68b68e77cd59bd0","after":"023a93c40ee674ac7b6cc99ed4f8f00e94151f55","ref":"refs/heads/master","pushedAt":"2024-04-11T03:26:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"set max count by length, not per read","shortMessageHtmlLink":"set max count by length, not per read"}},{"before":"c9815f407ab333ac238e54a11e824f0535e6d96f","after":"ec5fd5d071a663d2e2eaea9ba68b68e77cd59bd0","ref":"refs/heads/master","pushedAt":"2024-04-11T00:08:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"reduce running time in the worst case\n\nThis happens on hs37d5. The solution is to check nearby alleles only and\nrandomly sample up to 500 reads per allele.","shortMessageHtmlLink":"reduce running time in the worst case"}},{"before":"b0c4f4441e437cf8b60ffff06dc5d569c77d5e09","after":"c9815f407ab333ac238e54a11e824f0535e6d96f","ref":"refs/heads/master","pushedAt":"2024-04-09T04:18:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"fixed two bugs","shortMessageHtmlLink":"fixed two bugs"}},{"before":"7a9c7756e61c06b2f4c4bd71d0830fe85130420f","after":"b0c4f4441e437cf8b60ffff06dc5d569c77d5e09","ref":"refs/heads/master","pushedAt":"2024-04-09T02:24:21.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"only output INDELs on one segment\n\nAlso more precise INDEL positions regardless of strands","shortMessageHtmlLink":"only output INDELs on one segment"}},{"before":"084935e4cab20f892ddf95cce46e28fc0e9cf5b4","after":"7a9c7756e61c06b2f4c4bd71d0830fe85130420f","ref":"refs/heads/master","pushedAt":"2024-04-07T20:23:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"convert to VCF","shortMessageHtmlLink":"convert to VCF"}},{"before":"3560d89a777c66a78f642927321be9079d9f85a1","after":"084935e4cab20f892ddf95cce46e28fc0e9cf5b4","ref":"refs/heads/master","pushedAt":"2024-04-06T14:56:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"for sv comparison, take DUP as INS","shortMessageHtmlLink":"for sv comparison, take DUP as INS"}},{"before":"0267a1ca6b344fa37f59dc564f7102c5d2bc1552","after":"3560d89a777c66a78f642927321be9079d9f85a1","ref":"refs/heads/master","pushedAt":"2024-04-06T14:45:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"improved INS classification","shortMessageHtmlLink":"improved INS classification"}},{"before":"758a64446a355d05af34a1e50bcd097278c8a15d","after":"0267a1ca6b344fa37f59dc564f7102c5d2bc1552","ref":"refs/heads/master","pushedAt":"2024-04-06T04:18:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"minor tweak","shortMessageHtmlLink":"minor tweak"}},{"before":"55b54f3b015346e94ce365e16bc1c358ac1d8f14","after":"758a64446a355d05af34a1e50bcd097278c8a15d","ref":"refs/heads/master","pushedAt":"2024-04-06T03:37:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"filter by cen_dist and count","shortMessageHtmlLink":"filter by cen_dist and count"}},{"before":"b9c7225368cb19219563bdaa739a8e75e95c1043","after":"55b54f3b015346e94ce365e16bc1c358ac1d8f14","ref":"refs/heads/master","pushedAt":"2024-04-05T21:53:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"merging apparently working","shortMessageHtmlLink":"merging apparently working"}},{"before":"6b1bd3d1d070aa1326a61bb6073c8ec38c2bff9e","after":"b9c7225368cb19219563bdaa739a8e75e95c1043","ref":"refs/heads/master","pushedAt":"2024-04-05T20:53:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"refactoring: separate polyA length estimate","shortMessageHtmlLink":"refactoring: separate polyA length estimate"}},{"before":"9869778ddb25e37789d764ed73468777b5d46dca","after":"6b1bd3d1d070aa1326a61bb6073c8ec38c2bff9e","ref":"refs/heads/master","pushedAt":"2024-04-05T20:49:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"fixed wrongly reversed tsd_seq and insert","shortMessageHtmlLink":"fixed wrongly reversed tsd_seq and insert"}},{"before":"b54636417b625652b33618b07d705286ed684b4d","after":"9869778ddb25e37789d764ed73468777b5d46dca","ref":"refs/heads/master","pushedAt":"2024-04-05T15:16:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"code cleanup","shortMessageHtmlLink":"code cleanup"}},{"before":"e49b235582d3d51fbaa09a129dcfa58e67c7f70b","after":"b54636417b625652b33618b07d705286ed684b4d","ref":"refs/heads/master","pushedAt":"2024-04-05T01:38:18.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"cen_dist for breakpoints","shortMessageHtmlLink":"cen_dist for breakpoints"}},{"before":"36bd61611db4aaa0f1cc26d54e0411b5f0429ebc","after":"e49b235582d3d51fbaa09a129dcfa58e67c7f70b","ref":"refs/heads/master","pushedAt":"2024-04-04T23:20:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"added SVTYPE","shortMessageHtmlLink":"added SVTYPE"}},{"before":"ee7f2a83b978e51d60da5c639b5cbe66996a0931","after":"36bd61611db4aaa0f1cc26d54e0411b5f0429ebc","ref":"refs/heads/master","pushedAt":"2024-04-04T20:31:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"output sample name\n\nFor merging different samples","shortMessageHtmlLink":"output sample name"}},{"before":"26849e714238514997613da5287e699f362106d6","after":"ee7f2a83b978e51d60da5c639b5cbe66996a0931","ref":"refs/heads/master","pushedAt":"2024-04-04T20:19:49.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"added breakpoint parsing\n\nmergeindel currently doesn't work due to the change of output format","shortMessageHtmlLink":"added breakpoint parsing"}},{"before":"58599209ea90eaefd55698217181ded0f2d72363","after":"26849e714238514997613da5287e699f362106d6","ref":"refs/heads/master","pushedAt":"2024-03-11T02:47:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"r578: a bit more inline comments in getindel","shortMessageHtmlLink":"r578: a bit more inline comments in getindel"}},{"before":"07c212dbc2559607772c69152319128c608df373","after":"58599209ea90eaefd55698217181ded0f2d72363","ref":"refs/heads/master","pushedAt":"2024-03-11T02:42:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"r577: make getindel work with SAM","shortMessageHtmlLink":"r577: make getindel work with SAM"}},{"before":"868815bbe12fc79a65a81379df799740327c7190","after":"07c212dbc2559607772c69152319128c608df373","ref":"refs/heads/master","pushedAt":"2023-12-12T20:53:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"r576: removed debugging code","shortMessageHtmlLink":"r576: removed debugging code"}},{"before":"6ba54c26bd3245060c231a2bdb3db2c23aa077a4","after":"868815bbe12fc79a65a81379df799740327c7190","ref":"refs/heads/master","pushedAt":"2023-12-12T20:51:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lh3","name":"Heng Li","path":"/lh3","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/480346?s=80&v=4"},"commit":{"message":"r575: getindel to extract TSDs and polyAs","shortMessageHtmlLink":"r575: getindel to extract TSDs and polyAs"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEUGffQwA","startCursor":null,"endCursor":null}},"title":"Activity ยท lh3/minigraph"}