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Hi I have been using ksw_exts2_sse with following parameters:
int noncan = 9;
q = 4;
e = 2;
q2 = 32;
zdrop = 200;
flag = 1600;
and I get segmentation fault for big qlen and/or tlen. For example if tlen is greater than 80K or 90K or when qlen is greater than 40K or 50K of bases.
Does ksw2 have any limitation for qlen or tlen?
The text was updated successfully, but these errors were encountered:
Hi I have been using ksw_exts2_sse with following parameters:
int noncan = 9;
q = 4;
e = 2;
q2 = 32;
zdrop = 200;
flag = 1600;
and I get segmentation fault for big qlen and/or tlen. For example if tlen is greater than 80K or 90K or when qlen is greater than 40K or 50K of bases.
Does ksw2 have any limitation for qlen or tlen?
The text was updated successfully, but these errors were encountered: