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blacklisting region from a region file #14

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chklopp opened this issue Jun 15, 2020 · 0 comments
Open

blacklisting region from a region file #14

chklopp opened this issue Jun 15, 2020 · 0 comments

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@chklopp
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chklopp commented Jun 15, 2020

I would like draw the assembly graph after having removed the alternative haplotype (extracted using purge_dups) from an assembly graph gfa file. Could you add a feature to gfatools blacklist to produce a new gfa from an input gfa and a list of regions to remove?
The region could be given as a simple one column file, with one region per line, or comma separated in a command line option.

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