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Hi,
I ran the first step to get DO50374T.mak. fermi2.pl unitig -s3g -t16 -l150 -p DO50374T DO50374T.fq > DO50374T.mak Then run make: make -f DO50374T.mak
But it continue to say: make: Nothing to be done for 'all'. So what is the reason of the problem? below is the content of DO50374T.mak. Thanks!
PREFIX=DO50365T EXE_FERMI2=/home/xiz978/anaconda3/bin/fermi2 EXE_ROPEBWT2=/home/xiz978/anaconda3/bin/ropebwt2 EXE_BFC=/home/xiz978/anaconda3/bin/bfc GENOME_SIZE=3g K_UNITIG=51 K_CLEAN=56 K_TRIM=61 K_MERGE=76 N_THREADS=16 INPUT=cat DO50365T.fq.gz SHELL:=/bin/bash export SHELLOPTS:=errexit:pipefail all:$(PREFIX).mag.gz $(PREFIX).ec.fq.gz: bash -e -o pipefail -c '$(EXE_BFC) -s $(GENOME_SIZE) -t $(N_THREADS) <($(INPUT)) <($(INPUT)) 2> $@.log | gzip -1 > $@' $(PREFIX).flt.fq.gz:$(PREFIX).ec.fq.gz $(EXE_BFC) -1s $(GENOME_SIZE) -k $(K_TRIM) -t $(N_THREADS) $< 2> $@.log | gzip -1 > $@ $(PREFIX).flt.fmd:$(PREFIX).flt.fq.gz $(EXE_ROPEBWT2) -dNCr $< > $@ 2> $@.log $(PREFIX).pre.gz:$(PREFIX).flt.fmd $(EXE_FERMI2) assemble -l $(K_UNITIG) -m $(K_MERGE) -t $(N_THREADS) $< 2> $@.log | gzip -1 > $@ $(PREFIX).mag.gz:$(PREFIX).pre.gz $(EXE_FERMI2) simplify -CSo $(K_CLEAN) -m $(K_MERGE) -T $(K_UNITIG) $< 2> $@.log | gzip -1 > $@
The text was updated successfully, but these errors were encountered:
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Hi,
I ran the first step to get DO50374T.mak.
fermi2.pl unitig -s3g -t16 -l150 -p DO50374T DO50374T.fq > DO50374T.mak
Then run make:
make -f DO50374T.mak
But it continue to say: make: Nothing to be done for 'all'. So what is the reason of the problem? below is the content of DO50374T.mak. Thanks!
The text was updated successfully, but these errors were encountered: