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Running an "IndexError: list index out of range" error #178
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Hi @XNN19! The error suggests you are trying to pass native MCMICRO output files as input into CyLinter, but the names of the csv files (containing single cell data) which are passed as keys to the -Greg |
Hi @gjbaker Thank you for your patient reply.
I suspected the issue might be related to the dependencies in conda environment, so I re-installed CyLinter in a new conda environment. I'm pleased to report that it seems to be working fine now. Best regards, |
@XNN19 @gjbaker 15 minutes later, I downloaded the sample data again and it worked, perhaps this helps someone :) |
I received the same two errors mentioned above. If the suggestions already provided do not work, I noticed that ome.tif files versus ome.tiff are preferred regardless of the directions in the YAML Configuration File. |
Thank you for your comment @AditiSirsikar! I have updated the YAML configuration file to specify TIF (not TIFF). We will be releasing a new version soon with new features and which hopefully avoids future errors related to parsing input data files. |
Hi folks:
I installed the CyLinter environment on a macOS platform. Using these commends:
But when I ran the 561 and 568 commands, I met the following error:
I tried but still couldn't figure out the problem. I am afraid I am missing something silly, thank you for the help.
Best regards,
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