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Stony Brook University
- Stony Brook
- http://life.bio.sunysb.edu/ee/veeramahlab/
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GenoCaller_indent
GenoCaller_indent PublicaDNA_GenoCaller is a python program that calls genotypes from bam files at positions/regions specified in a bam file while ignoring a user-specified number of bases at the ends of reads
Python 2
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aDNA_GenoCaller
aDNA_GenoCaller PublicaDNA_GenoCaller is a python program that calls genotypes from bam files at positions/regions specified in a bam file while taking into account post mortem damage as estimate by MapDamage
Python 1
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Lynch-PoolSeq-estimator
Lynch-PoolSeq-estimator PublicMaximum likelihood estimator of population allele frequencies from Pool-seq data using the method of Lynch et al.GBE.2014
Python
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AF_estimate_pyvcf
AF_estimate_pyvcf PublicThis python script takes a vcf file and calculates allele frequencies using genotype likelihoods for a subset of individuals at specific loci using the method of Kim et al. BMC Bioinformatics 2011
Python 1
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