/
setup.cfg
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/
setup.cfg
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[metadata]
name = eureka
author = Eureka! pipeline developers
author_email = kbstevenson@gmail.com
description = A data reduction and analysis pipeline intended for time-series observations with JWST.
long_description = file: README.md
long_description_content_type = text/markdown
license = MIT License
license_files = [LICENSE,]
url = https://github.com/kevin218/Eureka
project_urls =
Bug Tracker = https://github.com/kevin218/Eureka/issues
Source Code = https://github.com/kevin218/Eureka
classifiers =
Programming Language :: Python :: 3
License :: OSI Approved :: BSD License
Operating System :: OS Independent
[options]
package_dir =
=src
packages = find:
zip_safe = True
python_requires= >=3.10
install_requires =
astraeus@git+https://github.com/kevin218/Astraeus@main
astropy
astroquery
batman-package
bokeh<3.0
ccdproc
celerite2 # Needed for GP
corner
crds
dynesty>1.0 # Lower limit needed for specific arguments
emcee>3.0.0 # Lower limit needed for specific arguments
exotic-ld==3 # Lower limit needed for updated JWST sensitivity files, upper limit needed for breaking changes
george # Needed for GP
h5py
lmfit
matplotlib>=3.6 # Lower limit needed for set_layout_engine()
mc3 # Needed for uncertainties in the Allan variance plots in S5
numpy>=1.20.0,<1.25 # Upper limit needed to avoid deprecations
pandas
photutils
requests
scipy>=1.4.0 # Lower limit needed for scipy.fft
setuptools_scm
stdatamodels
svo_filters
tqdm
[options.packages.find]
where = src
[options.extras_require]
jwst =
jwst==1.14.0
stcal>=1.0.0 # Lower limit needed for our create_integration_model function
hst =
image_registration@git+https://github.com/keflavich/image_registration@master # Need GitHub version to avoid np.float issue
docs =
myst-parser
nbsphinx
numpydoc
sphinx
sphinx-automodapi
sphinx-rtd-theme
test =
flake8
pytest<8.0 # Upper limit needed to avoid some conflict between pytest, an asdf package, and something in the pymc3 set of installs
pytest-cov
pytest-doctestplus
pymc3 =
jwst==1.11.4
stcal>=1.0.0 # Lower limit needed for our create_integration_model function
exoplanet
# mkl-service # Needed for theano - only available by conda install mkl-service
pymc3
starry>=1,<2
theano-pymc
# Extra version limits
numpy>=1.20.0,<1.22 # Upper limit needed for theano, starry, and pymc3
opencv-python-headless<4.8 # Upper limit needed for numpy<1.22
scipy>=1.4.0,<1.8.0 # Lower limit needed for scipy.fft, upper limit needed for theano, starry, and pymc3
xarray<2023.10.0 # Upper limit needed for numpy<1.22
jupyter =
jupyter
ipykernel
[flake8]
# Error codes explained here: https://pycodestyle.pycqa.org/en/latest/intro.html#error-codes
select = E1,E2,E3,E4,E5,E7,W6,F
ignore = W504,W503,E704,E226,E722
exclude =
# Ignore built files
./build/**/*
**/site-packages/**/*
# Ignore docs
./docs/**/*
# Ignore VS Code files
.vscode/*
# Ignore files in my ecfs folder
./ecfs/*
# Ignore run_eureka.py files in demos folder
**/run_eureka*.py
# Temporarily ignore NIRISS files
**/*niriss*.py
per-file-ignores =
# Need to have unused imports in the init files
**/__init__.py:F401
# Need unused imports in the init files, need to mute some warnings
./src/eureka/__init__.py:F401,E402
# Using exec commands, so variable is actually used
**/manageevent.py:F841
# Need to allow prepending to PATH
./demos/**/run_*.py:E402
# Need to protect against crashes if jwst not installed
**/test_*.py:E402
# Need to modify c compiler settings before importing starry
**/differentiable_models/*.py:E402
# Need to have unused imports in the init file
**/differentiable_models/__init__.py:F401
# Need to protect against crashes if hst packages not installed
**/test_WFC3.py:F401,E402
# Keep the unused numpy so users can pass in numpy values (e.g. np.inf)
**/readECF.py:F401
# Keep the aligned values to explain what they are
**/hst_scan.py:E241
# Temporarily ignore unused s1 error until we have an S1 test
**/test_MIRI.py:F401,E402
# Ignore over length bibtex lines
./src/eureka/lib/citations.py:E501