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Error at first stage of pipeline #44
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I just got this too, with the latest version cloned from the repo. Must be something that was introduced in the last fix David? |
Sorry should have mentioned the version - V1beta.5 020915 |
I was using V1beta.7 (BlackCat) |
Actually I'm not sure if it's the same error. With me it is: Starting pipeline...
|
Hi Jason, cheers, |
Hi David, No it is running on our cluster at AgriBio. |
In the log folder, is there a err file for the makeDir stage? |
yes there is but it is empty |
Okay - I should ask first, are you using a distributed system (i.e you have to queue jobs) or a dedicated server? If its a distributed system, which queuing system are you using (E.G. slurm, torque, or something else...)? |
We are running torque |
Which version of rubra did you install? |
It is version 0.1.5 |
Can you send me your config file via davidje@student(dot)unimelb(dot)edu(dot)au ? |
Thanks I will send that now |
Hi,
We are having a bit of trouble getting Red dog to run on our cluster. At this stage we can't seem to get past the first step. We keep getting the error below.
Thanks,
Jason
Starting pipeline...
427 jobs to be executed in total
stage = makeDir, jobID = 1692894
Traceback (most recent call last):
File "/usr/local/bin/rubra", line 9, in
load_entry_point('Rubra==0.1.5', 'console_scripts', 'rubra')()
File "/usr/local/lib/python2.7/site-packages/Rubra-0.1.5-py2.7.egg/rubra/rubra.py", line 66, in main
gnu_make_maximal_rebuild_mode=rebuildMode)
File "/usr/local/lib/python2.7/site-packages/ruffus-2.2-py2.7.egg/ruffus/task.py", line 2680, in pipeline_run
raise errt
ruffus.ruffus_exceptions.RethrownJobError:
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